miRNA display CGI


Results 101 - 120 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 36510 0.67 0.97368
Target:  5'- gCGCGCGGCcucgacgAGGCGg-GCGCAGgaGCCa -3'
miRNA:   3'- aGUGUGCUG-------UUUGCagUGCGUCg-CGG- -5'
24382 3' -52.3 NC_005264.1 + 36748 0.67 0.981117
Target:  5'- -aGCGCGAC-GGCGcCgGC-CGGCGCCg -3'
miRNA:   3'- agUGUGCUGuUUGCaG-UGcGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 36961 0.88 0.159603
Target:  5'- cCGCACGACAGAgGUUGCGCgcuGGCGCCa -3'
miRNA:   3'- aGUGUGCUGUUUgCAGUGCG---UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 37178 0.67 0.978915
Target:  5'- aCGCugGgccGCAGACG-CAUuuuaCGGCGCCg -3'
miRNA:   3'- aGUGugC---UGUUUGCaGUGc---GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 37536 0.67 0.978915
Target:  5'- ---gGCGucuuGCAAGCGUCAgGCGaagcgacagcGCGCCg -3'
miRNA:   3'- agugUGC----UGUUUGCAGUgCGU----------CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 37570 0.66 0.983142
Target:  5'- aC-CGCGACGGAggcggcaaGUCuCGCGGCgGCCg -3'
miRNA:   3'- aGuGUGCUGUUUg-------CAGuGCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 37664 0.73 0.800316
Target:  5'- gCACGCGAUGcgcGACGggCGCGCGGC-CCu -3'
miRNA:   3'- aGUGUGCUGU---UUGCa-GUGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 38043 0.66 0.985696
Target:  5'- -uGCACGACGGucGCGUgggucUcccagcuuuuuucuuGCGCGGCGUCa -3'
miRNA:   3'- agUGUGCUGUU--UGCA-----G---------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 38178 0.75 0.682977
Target:  5'- cCGCGCugugggGACAccuAGCGUCGCGCGGC-CCg -3'
miRNA:   3'- aGUGUG------CUGU---UUGCAGUGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 38524 0.66 0.983142
Target:  5'- --uCugGACAGGauuagCGCGCAGUGUCa -3'
miRNA:   3'- aguGugCUGUUUgca--GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 38658 0.66 0.989643
Target:  5'- gUCGa--GAUGAugGcCGCgGCGGCGCCc -3'
miRNA:   3'- -AGUgugCUGUUugCaGUG-CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 39105 0.67 0.97117
Target:  5'- gCGuCugGACcAGCugcuGUCguggACGCGGCGCCa -3'
miRNA:   3'- aGU-GugCUGuUUG----CAG----UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 39384 0.69 0.951617
Target:  5'- cUCAgACGAUGacGACGUCggcgaagggggcacuGCGCugcucAGCGCCg -3'
miRNA:   3'- -AGUgUGCUGU--UUGCAG---------------UGCG-----UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 39562 0.8 0.412724
Target:  5'- cCGCGCGGCAAGcCGggacugaucuaccuUCGCGUGGCGCCg -3'
miRNA:   3'- aGUGUGCUGUUU-GC--------------AGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 39668 0.68 0.968184
Target:  5'- -uGgGCGGCAAGCaUCGCGacaAGCgGCCg -3'
miRNA:   3'- agUgUGCUGUUUGcAGUGCg--UCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 40030 0.67 0.981117
Target:  5'- aCGCAgauCGGCGGcgGUCGaccaagggccCGCAGCGCCc -3'
miRNA:   3'- aGUGU---GCUGUUugCAGU----------GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 40179 0.75 0.682977
Target:  5'- cCAuCGCGACGAAUGUCA-GC-GCGCCc -3'
miRNA:   3'- aGU-GUGCUGUUUGCAGUgCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 40315 0.69 0.936194
Target:  5'- gUAgACGGCGAGCG-CA-GCAGUGUCg -3'
miRNA:   3'- aGUgUGCUGUUUGCaGUgCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 40750 0.7 0.912652
Target:  5'- uUCACGgccuCGGCAAAUGuuauguccccuacaUCuucCGCGGCGCCg -3'
miRNA:   3'- -AGUGU----GCUGUUUGC--------------AGu--GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 40953 0.69 0.94102
Target:  5'- aUCGCGCGGCuugcucguAACaGUCugGaagcuuGCGCCg -3'
miRNA:   3'- -AGUGUGCUGu-------UUG-CAGugCgu----CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.