miRNA display CGI


Results 21 - 40 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 154382 0.7 0.918531
Target:  5'- aCGaGCGACGAACucgagcugaaaccaGUUGCGcCGGCGCCa -3'
miRNA:   3'- aGUgUGCUGUUUG--------------CAGUGC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 154199 0.76 0.620946
Target:  5'- uUCGCGCGAaacgUAGACGUgGCGgugaAGCGCCu -3'
miRNA:   3'- -AGUGUGCU----GUUUGCAgUGCg---UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 153615 0.67 0.97117
Target:  5'- aCGCGCGugGuagcGGCGUUuCGCAGaaaguacaaCGCCa -3'
miRNA:   3'- aGUGUGCugU----UUGCAGuGCGUC---------GCGG- -5'
24382 3' -52.3 NC_005264.1 + 152296 0.7 0.908392
Target:  5'- aCGCGCGAUccGCGccccugaGgGCGGCGCCg -3'
miRNA:   3'- aGUGUGCUGuuUGCag-----UgCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 152004 0.66 0.986696
Target:  5'- -gACACG-CGGGC-UCGCGCAuauCGCCa -3'
miRNA:   3'- agUGUGCuGUUUGcAGUGCGUc--GCGG- -5'
24382 3' -52.3 NC_005264.1 + 150984 0.67 0.981117
Target:  5'- cUCGCgaguggcgGCGACGGgccGCGUguccgaugCGCGCuacAGCGCCa -3'
miRNA:   3'- -AGUG--------UGCUGUU---UGCA--------GUGCG---UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 150683 0.72 0.818122
Target:  5'- -uGC-CGACAGACGagACccagcaacggGCAGCGCCg -3'
miRNA:   3'- agUGuGCUGUUUGCagUG----------CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 150631 0.68 0.964985
Target:  5'- cUCugGCGA--GGCGgCGCGCAuCGCCc -3'
miRNA:   3'- -AGugUGCUguUUGCaGUGCGUcGCGG- -5'
24382 3' -52.3 NC_005264.1 + 150521 0.68 0.954053
Target:  5'- cCAguCACGAgGAAgGUCAgGCGGCuCCa -3'
miRNA:   3'- aGU--GUGCUgUUUgCAGUgCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 150495 0.7 0.902101
Target:  5'- gUCGC-CGAUggGCGUggAUGguGCGCCc -3'
miRNA:   3'- -AGUGuGCUGuuUGCAg-UGCguCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 149649 0.73 0.791173
Target:  5'- -gGCgGCGACGGAUccgCGCGCAGCGCg -3'
miRNA:   3'- agUG-UGCUGUUUGca-GUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 149466 0.66 0.989374
Target:  5'- gUCGCGCGAUGAGCuagacgaGUCGCuCGagccgcucgauucGCGCCg -3'
miRNA:   3'- -AGUGUGCUGUUUG-------CAGUGcGU-------------CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 148431 0.68 0.964985
Target:  5'- aCGgGCGugGGACGgaguuauacCACGCuGCGCg -3'
miRNA:   3'- aGUgUGCugUUUGCa--------GUGCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 148054 0.66 0.982947
Target:  5'- aCACAuaaagcuuuucguUGGCGAAUG-CG-GCGGCGCCa -3'
miRNA:   3'- aGUGU-------------GCUGUUUGCaGUgCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 147798 0.67 0.981117
Target:  5'- -uGCGCGACGGAgGUgAgGUAG-GCCu -3'
miRNA:   3'- agUGUGCUGUUUgCAgUgCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 146764 0.67 0.978915
Target:  5'- -gGCAacaGCAAGCGcCGCGCGGCGg- -3'
miRNA:   3'- agUGUgc-UGUUUGCaGUGCGUCGCgg -5'
24382 3' -52.3 NC_005264.1 + 146512 0.66 0.988241
Target:  5'- cCGCGCGGuucCAGagcuacGCGUCGagagUGCGGCGCa -3'
miRNA:   3'- aGUGUGCU---GUU------UGCAGU----GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 146359 0.71 0.874581
Target:  5'- aCGCAUGugAcuCGUCGCccccCAGCGCUg -3'
miRNA:   3'- aGUGUGCugUuuGCAGUGc---GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 145509 0.68 0.957925
Target:  5'- -gGCACuGCAGACGUCcACggcaacggagaaGCAGCGaCCa -3'
miRNA:   3'- agUGUGcUGUUUGCAG-UG------------CGUCGC-GG- -5'
24382 3' -52.3 NC_005264.1 + 145450 0.67 0.973949
Target:  5'- aCACAaugaGAcCGAACGgcgCACGUAcacagaccGCGCCg -3'
miRNA:   3'- aGUGUg---CU-GUUUGCa--GUGCGU--------CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.