miRNA display CGI


Results 41 - 60 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 145422 0.67 0.978915
Target:  5'- aUACACuaGGCcuAGACGUCACGCcGCaCCu -3'
miRNA:   3'- aGUGUG--CUG--UUUGCAGUGCGuCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 145035 0.66 0.988241
Target:  5'- gUCGgAgGACGcaagAACGUCACGaauGuCGCCa -3'
miRNA:   3'- -AGUgUgCUGU----UUGCAGUGCgu-C-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 144988 0.66 0.983142
Target:  5'- cUCACGCGGuCGAACa--GCGC-GCGCg -3'
miRNA:   3'- -AGUGUGCU-GUUUGcagUGCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 144414 0.67 0.981117
Target:  5'- cCcCGCGcCGAGCGagagggCGCGCcuGCGCCg -3'
miRNA:   3'- aGuGUGCuGUUUGCa-----GUGCGu-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 143300 0.67 0.978915
Target:  5'- cUCGCucCGGC-AACG-UugGCGGCgGCCg -3'
miRNA:   3'- -AGUGu-GCUGuUUGCaGugCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 143148 0.71 0.888804
Target:  5'- aCGCACGGCAcugguuacaguuAACGUagUugGCgAGUGCCc -3'
miRNA:   3'- aGUGUGCUGU------------UUGCA--GugCG-UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 142903 0.72 0.851593
Target:  5'- gUCACgGCGACGAuGCGUCcucgagguacugGCaCGGCGCCa -3'
miRNA:   3'- -AGUG-UGCUGUU-UGCAG------------UGcGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 142605 0.69 0.94102
Target:  5'- --cCGCGACGAugGcCACGCcGgGCUa -3'
miRNA:   3'- aguGUGCUGUUugCaGUGCGuCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 141962 0.67 0.981117
Target:  5'- -gAgACGACcaagaccAGAgucuuucuccuuuuaGUCGCGCAGCGCCg -3'
miRNA:   3'- agUgUGCUG-------UUUg--------------CAGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 141567 0.66 0.986533
Target:  5'- cCGCugGAgauGGCGUUAccaccucCGCGGCGCg -3'
miRNA:   3'- aGUGugCUgu-UUGCAGU-------GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 139868 0.71 0.888804
Target:  5'- gCACGgGGCGAACGuacggUCACGUcuaAGgGCCa -3'
miRNA:   3'- aGUGUgCUGUUUGC-----AGUGCG---UCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 139613 0.68 0.968184
Target:  5'- aCACACGuaaucCAacAAC-UCGCGCGGCGgCa -3'
miRNA:   3'- aGUGUGCu----GU--UUGcAGUGCGUCGCgG- -5'
24382 3' -52.3 NC_005264.1 + 139042 0.77 0.568381
Target:  5'- gCGCGCGAUGAACGcuucagcUCGCGgaGGCGCCg -3'
miRNA:   3'- aGUGUGCUGUUUGC-------AGUGCg-UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 138360 0.68 0.967247
Target:  5'- -aACGCGACuaucgcAACGUCACGCcgacgauguucgagGGCaGCUg -3'
miRNA:   3'- agUGUGCUGu-----UUGCAGUGCG--------------UCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 137820 0.66 0.988241
Target:  5'- cCGgGCGccuCAGGagaGgCAUGCAGCGCCu -3'
miRNA:   3'- aGUgUGCu--GUUUg--CaGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 137296 0.72 0.82677
Target:  5'- -aGCGCGACAAGCGcCuuGUccGCGCCg -3'
miRNA:   3'- agUGUGCUGUUUGCaGugCGu-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 136931 0.67 0.978915
Target:  5'- cCGCuucgUGGCGGACaagaagGCGCAGCGCCc -3'
miRNA:   3'- aGUGu---GCUGUUUGcag---UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 136902 0.68 0.957925
Target:  5'- gCGUACGugAGccGCGUCGUGCAGUGCa -3'
miRNA:   3'- aGUGUGCugUU--UGCAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 136727 0.66 0.983142
Target:  5'- cCGCGCcACGAGC--CGCGCGGUgGCCa -3'
miRNA:   3'- aGUGUGcUGUUUGcaGUGCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 136463 0.69 0.949947
Target:  5'- cCGCGCucagaGAC-GGCGcCGCGCAGCcuGCCg -3'
miRNA:   3'- aGUGUG-----CUGuUUGCaGUGCGUCG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.