miRNA display CGI


Results 61 - 80 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 136113 0.66 0.989643
Target:  5'- -gACgACGACGAauaacgacGCGgggaGCGCAuGCGCCc -3'
miRNA:   3'- agUG-UGCUGUU--------UGCag--UGCGU-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 134969 0.66 0.983142
Target:  5'- -gACACGACAAAaaggCG-GCGGCGCa -3'
miRNA:   3'- agUGUGCUGUUUgca-GUgCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 134897 0.69 0.949947
Target:  5'- -gACACGACcacCGaCGCGCAGacaCGCCa -3'
miRNA:   3'- agUGUGCUGuuuGCaGUGCGUC---GCGG- -5'
24382 3' -52.3 NC_005264.1 + 134789 0.75 0.703404
Target:  5'- cCGCGCGcuuuuACccGGCGUCGCGC-GCGCCg -3'
miRNA:   3'- aGUGUGC-----UGu-UUGCAGUGCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 134729 0.67 0.981117
Target:  5'- uUCAuagcCACGAUAGGCG-C-CGguGCGCa -3'
miRNA:   3'- -AGU----GUGCUGUUUGCaGuGCguCGCGg -5'
24382 3' -52.3 NC_005264.1 + 134542 0.66 0.986533
Target:  5'- -gACGCGcccGCAGAaggccaaguacccCGUCACGaccuGCGCCa -3'
miRNA:   3'- agUGUGC---UGUUU-------------GCAGUGCgu--CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 134319 0.67 0.976528
Target:  5'- aCACAgGACGGcucaguAgGUCGCaugauaauagGCAGCGCUa -3'
miRNA:   3'- aGUGUgCUGUU------UgCAGUG----------CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 133539 0.69 0.949523
Target:  5'- -uGCAUGGCGcaaagaaAACGUCGagGCAcGCGCCc -3'
miRNA:   3'- agUGUGCUGU-------UUGCAGUg-CGU-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 133498 0.71 0.867133
Target:  5'- gUACcCGGCAGACGUCGuagcCGCaggaGGCGCUg -3'
miRNA:   3'- aGUGuGCUGUUUGCAGU----GCG----UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 133376 0.67 0.981117
Target:  5'- -gACuCGGCGAGaGUCAuCGCGGCGgCg -3'
miRNA:   3'- agUGuGCUGUUUgCAGU-GCGUCGCgG- -5'
24382 3' -52.3 NC_005264.1 + 132450 0.74 0.743444
Target:  5'- gCGCGCGACcgccgccgccgAGACGcgaCGCgGCGGCGCCg -3'
miRNA:   3'- aGUGUGCUG-----------UUUGCa--GUG-CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 131980 0.74 0.743444
Target:  5'- cUCGCgACGACAGGCcgGUgGCGguGgGCCg -3'
miRNA:   3'- -AGUG-UGCUGUUUG--CAgUGCguCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 131685 0.66 0.982947
Target:  5'- -gGCACGucggcucGCAAGCGUagcgugggccUGCGCGGCGUUg -3'
miRNA:   3'- agUGUGC-------UGUUUGCA----------GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 131623 0.7 0.902101
Target:  5'- gCGCGCGGagaagaacaGAugGUCACGCcucggucugcGGUGCCc -3'
miRNA:   3'- aGUGUGCUg--------UUugCAGUGCG----------UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 131020 0.75 0.693217
Target:  5'- -gGCACGGCAGaguacGCGUCACgaccugcgGCGGCGaCCg -3'
miRNA:   3'- agUGUGCUGUU-----UGCAGUG--------CGUCGC-GG- -5'
24382 3' -52.3 NC_005264.1 + 130273 0.67 0.97117
Target:  5'- -uGCGCGACGuuGCGgcggCuacCGCGGCaGCCa -3'
miRNA:   3'- agUGUGCUGUu-UGCa---Gu--GCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 129904 0.76 0.641677
Target:  5'- -aACAU-ACAGAC-UCACGCGGCGCCc -3'
miRNA:   3'- agUGUGcUGUUUGcAGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 129494 0.75 0.703404
Target:  5'- aUUGCgGCGGCGcAGgGUUugGCGGCGCCg -3'
miRNA:   3'- -AGUG-UGCUGU-UUgCAGugCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 129281 0.76 0.609554
Target:  5'- cUCGCGCGcaAUAAACGaacuuacgcuuauUCGCgGCAGCGCCg -3'
miRNA:   3'- -AGUGUGC--UGUUUGC-------------AGUG-CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 128931 0.67 0.973949
Target:  5'- cCugGCGGCAGAa---AgGCGGCGCUa -3'
miRNA:   3'- aGugUGCUGUUUgcagUgCGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.