miRNA display CGI


Results 81 - 100 of 451 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 128514 0.73 0.772457
Target:  5'- cUCGCgucaGCGAguCAGccaGCGUCagGCGCGGCGCCc -3'
miRNA:   3'- -AGUG----UGCU--GUU---UGCAG--UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 127865 0.88 0.163769
Target:  5'- -aACACGACAAACGUCGCG-AGCGUCg -3'
miRNA:   3'- agUGUGCUGUUUGCAGUGCgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 127810 0.66 0.989643
Target:  5'- gUCGCGCGAgcCAucucccgacAGCGUUGCcuccGCGGCgGCCg -3'
miRNA:   3'- -AGUGUGCU--GU---------UUGCAGUG----CGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 127803 0.68 0.952846
Target:  5'- gCGaACGGCGGGCGUCggccaggacggccaGCGCuccucuucgAGCGCCg -3'
miRNA:   3'- aGUgUGCUGUUUGCAG--------------UGCG---------UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 127382 0.73 0.781884
Target:  5'- cUCGCGucaGGCGAugGUUACGUGGUGCg -3'
miRNA:   3'- -AGUGUg--CUGUUugCAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 127037 0.68 0.957925
Target:  5'- -gGC-CGGCAGAggcgccCGcCACGaCGGCGCCa -3'
miRNA:   3'- agUGuGCUGUUU------GCaGUGC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 126147 0.68 0.964985
Target:  5'- cUUGCGCGGCAGAa-UC-CGCcauuGCGCCa -3'
miRNA:   3'- -AGUGUGCUGUUUgcAGuGCGu---CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 126076 0.71 0.888804
Target:  5'- -uGCGCG-CAAGCG--GCGaCGGCGCCg -3'
miRNA:   3'- agUGUGCuGUUUGCagUGC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 125497 0.84 0.269657
Target:  5'- -gGCGCGGCGAACGUCGgGguGCGCg -3'
miRNA:   3'- agUGUGCUGUUUGCAGUgCguCGCGg -5'
24382 3' -52.3 NC_005264.1 + 124803 0.68 0.954053
Target:  5'- cCACGCGAC---CGUCGUGCAccaccgagGCGCCc -3'
miRNA:   3'- aGUGUGCUGuuuGCAGUGCGU--------CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 124769 0.66 0.982947
Target:  5'- -aGCACGGCGGGuaggcauUGUgAgaGCGGCGCCu -3'
miRNA:   3'- agUGUGCUGUUU-------GCAgUg-CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 124725 0.67 0.97117
Target:  5'- gCGCGCGGgcAACGcCugGCGGCGg- -3'
miRNA:   3'- aGUGUGCUguUUGCaGugCGUCGCgg -5'
24382 3' -52.3 NC_005264.1 + 124656 0.67 0.973949
Target:  5'- cCGCGCGACgcuAggUGUCcccacaGCGCGGCGgUa -3'
miRNA:   3'- aGUGUGCUG---UuuGCAG------UGCGUCGCgG- -5'
24382 3' -52.3 NC_005264.1 + 124574 0.67 0.980905
Target:  5'- gUC-CGgGACuGACGUCACcgacagcaccgcgGaCAGCGCCu -3'
miRNA:   3'- -AGuGUgCUGuUUGCAGUG-------------C-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 124445 0.71 0.888804
Target:  5'- gUACGCGGCAucugucucGGCGUCGcCGCucuCGCCg -3'
miRNA:   3'- aGUGUGCUGU--------UUGCAGU-GCGuc-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 123691 0.66 0.983142
Target:  5'- -aGCACGAuCAGggaauaccuGCGUCGgggcgaGUGGCGCCg -3'
miRNA:   3'- agUGUGCU-GUU---------UGCAGUg-----CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 123407 0.66 0.984459
Target:  5'- cCGCccCGGCAaaaccGAUGUCuccggcgcugagcaGCGCAGUGCCc -3'
miRNA:   3'- aGUGu-GCUGU-----UUGCAG--------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 123242 0.69 0.936194
Target:  5'- --cCACG-CAAGCuUCGCuagGCGGCGCCa -3'
miRNA:   3'- aguGUGCuGUUUGcAGUG---CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 123208 0.68 0.957548
Target:  5'- cCGCGCGGCAAAaccacagcgcCGUgucuaggagcaagCGCGCAGCuCCg -3'
miRNA:   3'- aGUGUGCUGUUU----------GCA-------------GUGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 123112 0.68 0.961567
Target:  5'- gUUGCACGGgcGGCGUCGCGgcacgaCGGgGCCg -3'
miRNA:   3'- -AGUGUGCUguUUGCAGUGC------GUCgCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.