miRNA display CGI


Results 101 - 120 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 122662 0.73 0.781884
Target:  5'- gCGCGCuGACAuuCGUCGCGaUGGcCGCCg -3'
miRNA:   3'- aGUGUG-CUGUuuGCAGUGC-GUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 122558 1.14 0.003758
Target:  5'- uUCACACGACAAACGUCACGCAGCGCCg -3'
miRNA:   3'- -AGUGUGCUGUUUGCAGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 122193 0.72 0.851593
Target:  5'- ---aACGGCGAcccuccGCGUCGCGaCGGCGCg -3'
miRNA:   3'- agugUGCUGUU------UGCAGUGC-GUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 122043 0.71 0.867133
Target:  5'- cCcCGCGGCAAGCGgcucCGCucuCGGCGCCg -3'
miRNA:   3'- aGuGUGCUGUUUGCa---GUGc--GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 121858 0.68 0.957925
Target:  5'- gUugGCGGaGGGCcgGUCGCGCucGCGCCg -3'
miRNA:   3'- aGugUGCUgUUUG--CAGUGCGu-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 121504 0.67 0.980905
Target:  5'- uUCGCGgcugcuuCGACGAugGUCG-GCGG-GCCu -3'
miRNA:   3'- -AGUGU-------GCUGUUugCAGUgCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 120658 0.69 0.939597
Target:  5'- -gGCGCGGCuccaaccuGccaucucuuuccggGCGUUACGcCAGCGCCu -3'
miRNA:   3'- agUGUGCUGu-------U--------------UGCAGUGC-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 120204 0.71 0.874581
Target:  5'- gCGCGCGAUggGgG-UACGCAGCGgaCCg -3'
miRNA:   3'- aGUGUGCUGuuUgCaGUGCGUCGC--GG- -5'
24382 3' -52.3 NC_005264.1 + 119650 0.73 0.781884
Target:  5'- cCGC-CGGCccGCGUCGCagGCAGCGCg -3'
miRNA:   3'- aGUGuGCUGuuUGCAGUG--CGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 119219 0.67 0.981117
Target:  5'- aCGCGCGACcacgcGAgGUUugGC-GCGCa -3'
miRNA:   3'- aGUGUGCUGu----UUgCAGugCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 119156 0.67 0.981117
Target:  5'- cCGCucccCGGCGgccgccuuAACGccggCGCGCAGCGCg -3'
miRNA:   3'- aGUGu---GCUGU--------UUGCa---GUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 118973 0.66 0.984999
Target:  5'- -gGCgACGACGaaGACGUCuuugcCGgcccCAGCGCCa -3'
miRNA:   3'- agUG-UGCUGU--UUGCAGu----GC----GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 118288 0.68 0.952846
Target:  5'- -aGCACGGCGuuuGACGUCucggugauguacucGCGC-GCGUCg -3'
miRNA:   3'- agUGUGCUGU---UUGCAG--------------UGCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 117901 0.67 0.976279
Target:  5'- gUCACGCGcGCAAcgggcccGCGguuCGCuuGCGCCg -3'
miRNA:   3'- -AGUGUGC-UGUU-------UGCaguGCGu-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 117513 0.66 0.986696
Target:  5'- -gGCGCGGC--GCGUC-UGCGGuCGCUc -3'
miRNA:   3'- agUGUGCUGuuUGCAGuGCGUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 117021 0.72 0.842694
Target:  5'- gCGCAUGACGAguacagcGCGaUCAgCGCGGCgGCCc -3'
miRNA:   3'- aGUGUGCUGUU-------UGC-AGU-GCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 116405 0.68 0.954053
Target:  5'- cCGCA-GGCcGACGUCgaGCGCAGgGCg -3'
miRNA:   3'- aGUGUgCUGuUUGCAG--UGCGUCgCGg -5'
24382 3' -52.3 NC_005264.1 + 116270 0.66 0.988241
Target:  5'- aCGCGCGACuuggaagcCGUgGCGCGGgCGgCu -3'
miRNA:   3'- aGUGUGCUGuuu-----GCAgUGCGUC-GCgG- -5'
24382 3' -52.3 NC_005264.1 + 116110 0.68 0.954053
Target:  5'- gUACAUGcCAGACauaGCGCuGCGCCu -3'
miRNA:   3'- aGUGUGCuGUUUGcagUGCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 115944 0.76 0.620946
Target:  5'- aCACGCGGCGcaGGCuaggaggUACGCGGCGCCc -3'
miRNA:   3'- aGUGUGCUGU--UUGca-----GUGCGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.