miRNA display CGI


Results 121 - 140 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 115428 0.67 0.976528
Target:  5'- aUCACAUuACGGGCG--GCGCAcccaaccacGCGCCa -3'
miRNA:   3'- -AGUGUGcUGUUUGCagUGCGU---------CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 115288 0.78 0.499296
Target:  5'- -aGCGCGACAacGACGUCccGCGCAGC-CCu -3'
miRNA:   3'- agUGUGCUGU--UUGCAG--UGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 114734 0.73 0.791173
Target:  5'- gUACACGugAAAcuCGUgaaaGCGCAGCGCg -3'
miRNA:   3'- aGUGUGCugUUU--GCAg---UGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 114647 0.67 0.973949
Target:  5'- -gGCACaGACGAACGagCACGCuagcuuuccAGaCGCCu -3'
miRNA:   3'- agUGUG-CUGUUUGCa-GUGCG---------UC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 114615 0.67 0.981117
Target:  5'- cCGCAggcaGACAugcccagcAGCGUCACcaCGGUGCCa -3'
miRNA:   3'- aGUGUg---CUGU--------UUGCAGUGc-GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 114450 0.73 0.772457
Target:  5'- gUCGCcuCGACGAACGUCG---AGCGCCu -3'
miRNA:   3'- -AGUGu-GCUGUUUGCAGUgcgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 113380 0.71 0.867133
Target:  5'- aUACGCGGCGAgugaGCGcgCACauucuaGCAGCGCUg -3'
miRNA:   3'- aGUGUGCUGUU----UGCa-GUG------CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 112981 0.67 0.976528
Target:  5'- aUACGCuGCGcGGCGUCAC-CAGgGCCc -3'
miRNA:   3'- aGUGUGcUGU-UUGCAGUGcGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 112504 0.66 0.988241
Target:  5'- cCGCAgGACAAG-GUCgACGCcGCGUa -3'
miRNA:   3'- aGUGUgCUGUUUgCAG-UGCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 112301 0.66 0.989643
Target:  5'- -aGCuuCGACAGGCcucUugGCAGCGCa -3'
miRNA:   3'- agUGu-GCUGUUUGca-GugCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 112227 0.71 0.859468
Target:  5'- aUguCAUGACAAA-GUCGCGaacgucCAGCGCCg -3'
miRNA:   3'- -AguGUGCUGUUUgCAGUGC------GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 112024 0.72 0.82677
Target:  5'- cUACACG-CAAACcugCGCGC-GCGCCg -3'
miRNA:   3'- aGUGUGCuGUUUGca-GUGCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 111578 0.76 0.611624
Target:  5'- aCGCGCGACAGAUGUUccgcgauuccugaacCGCGGCGCg -3'
miRNA:   3'- aGUGUGCUGUUUGCAGu--------------GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 110385 0.66 0.986696
Target:  5'- cCGCcgACGGCGGGCG-CAUGCuGaCGCUg -3'
miRNA:   3'- aGUG--UGCUGUUUGCaGUGCGuC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 110050 0.68 0.957925
Target:  5'- -gGCGCGGCAAGCGacagUACGCgAGUaCCa -3'
miRNA:   3'- agUGUGCUGUUUGCa---GUGCG-UCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 109804 0.66 0.988241
Target:  5'- cCGCGCGACuaGAACGcUUACugggGCAGUGUUg -3'
miRNA:   3'- aGUGUGCUG--UUUGC-AGUG----CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 108594 0.7 0.914441
Target:  5'- cCACuCGAC--ACGUuggCGCGCGGgGCCg -3'
miRNA:   3'- aGUGuGCUGuuUGCA---GUGCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 108221 0.7 0.895571
Target:  5'- aCACuaACGugGccGAUGUCcCGCAcGCGCCg -3'
miRNA:   3'- aGUG--UGCugU--UUGCAGuGCGU-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 108103 0.67 0.981117
Target:  5'- uUCGguCGAUGAGuucCGUcCACGUgAGCGCCa -3'
miRNA:   3'- -AGUguGCUGUUU---GCA-GUGCG-UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 107912 0.66 0.983142
Target:  5'- cCACuCG-CAGcCGuUCGCcaGCAGCGCCg -3'
miRNA:   3'- aGUGuGCuGUUuGC-AGUG--CGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.