miRNA display CGI


Results 61 - 80 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 87745 0.75 0.693217
Target:  5'- -aGCGCGACu-GCGUCAaGUAGCGCa -3'
miRNA:   3'- agUGUGCUGuuUGCAGUgCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 7350 0.75 0.703404
Target:  5'- uUCGCAcCGGCAAAa-UCugGCGGcCGCCg -3'
miRNA:   3'- -AGUGU-GCUGUUUgcAGugCGUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 122662 0.73 0.781884
Target:  5'- gCGCGCuGACAuuCGUCGCGaUGGcCGCCg -3'
miRNA:   3'- aGUGUG-CUGUuuGCAGUGC-GUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 81750 0.73 0.781884
Target:  5'- uUCugGCGGCAagaagcacgaGACGUgCGCGCAGCauaCCg -3'
miRNA:   3'- -AGugUGCUGU----------UUGCA-GUGCGUCGc--GG- -5'
24382 3' -52.3 NC_005264.1 + 119650 0.73 0.781884
Target:  5'- cCGC-CGGCccGCGUCGCagGCAGCGCg -3'
miRNA:   3'- aGUGuGCUGuuUGCAGUG--CGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 17024 0.73 0.781884
Target:  5'- -aAgGCGGCGAuCGUCGCcaGCAGCGCg -3'
miRNA:   3'- agUgUGCUGUUuGCAGUG--CGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 13957 0.73 0.791173
Target:  5'- cCACGCGGCGAcgaggagacgaGCGagACGCGGgGUCg -3'
miRNA:   3'- aGUGUGCUGUU-----------UGCagUGCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 78606 0.73 0.791173
Target:  5'- cCACGCGGUAGGCaagCuCGCGGCGCCu -3'
miRNA:   3'- aGUGUGCUGUUUGca-GuGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 149649 0.73 0.791173
Target:  5'- -gGCgGCGACGGAUccgCGCGCAGCGCg -3'
miRNA:   3'- agUG-UGCUGUUUGca-GUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 156690 0.73 0.800316
Target:  5'- gCACGCGAUGcgcGACGggCGCGCGGC-CCu -3'
miRNA:   3'- aGUGUGCUGU---UUGCa-GUGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 58019 0.73 0.781884
Target:  5'- -gGCG-GACAGGcCGUCGUGCGGCGCCc -3'
miRNA:   3'- agUGUgCUGUUU-GCAGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 128514 0.73 0.772457
Target:  5'- cUCGCgucaGCGAguCAGccaGCGUCagGCGCGGCGCCc -3'
miRNA:   3'- -AGUG----UGCU--GUU---UGCAG--UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 21438 0.75 0.703404
Target:  5'- cUUGgGCGACAgaGACGUCACcaacuGCAGCGUCc -3'
miRNA:   3'- -AGUgUGCUGU--UUGCAGUG-----CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 27702 0.74 0.723585
Target:  5'- cCugACGACGGAUGUCGCGgGGCa-- -3'
miRNA:   3'- aGugUGCUGUUUGCAGUGCgUCGcgg -5'
24382 3' -52.3 NC_005264.1 + 4876 0.74 0.73356
Target:  5'- cUugGCGGCAAGCGaCACGCGGaguucgagGCCa -3'
miRNA:   3'- aGugUGCUGUUUGCaGUGCGUCg-------CGG- -5'
24382 3' -52.3 NC_005264.1 + 96592 0.74 0.73356
Target:  5'- aCACgucaACGGCAAAUuggaacccaGUCACGCGGCGUg -3'
miRNA:   3'- aGUG----UGCUGUUUG---------CAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 132450 0.74 0.743444
Target:  5'- gCGCGCGACcgccgccgccgAGACGcgaCGCgGCGGCGCCg -3'
miRNA:   3'- aGUGUGCUG-----------UUUGCa--GUG-CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 6750 0.73 0.761939
Target:  5'- -gGCGCGGgAAGUGuucaucgauguauUCGCGCAGCGCCg -3'
miRNA:   3'- agUGUGCUgUUUGC-------------AGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 87530 0.73 0.772457
Target:  5'- gCGCGCGGCAGAUG-C-UGCAGCGUg -3'
miRNA:   3'- aGUGUGCUGUUUGCaGuGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 76348 0.73 0.772457
Target:  5'- cCGCGCGGCGAcUG-CGCGCAGgCGCg -3'
miRNA:   3'- aGUGUGCUGUUuGCaGUGCGUC-GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.