miRNA display CGI


Results 101 - 120 of 451 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 122193 0.72 0.851593
Target:  5'- ---aACGGCGAcccuccGCGUCGCGaCGGCGCg -3'
miRNA:   3'- agugUGCUGUU------UGCAGUGC-GUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 4755 0.72 0.851593
Target:  5'- cUCGCAUaGGCuGAUGUgcgccuucUGCGCGGCGCCg -3'
miRNA:   3'- -AGUGUG-CUGuUUGCA--------GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 77772 0.72 0.851593
Target:  5'- aUCugACGACGcggccgcagaGACG-CAcCGCGGCGCa -3'
miRNA:   3'- -AGugUGCUGU----------UUGCaGU-GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 15031 0.71 0.864856
Target:  5'- cCAgACGACAAGgccuaccucaccucCGUCGCGCAguucGCGCg -3'
miRNA:   3'- aGUgUGCUGUUU--------------GCAGUGCGU----CGCGg -5'
24382 3' -52.3 NC_005264.1 + 133498 0.71 0.867133
Target:  5'- gUACcCGGCAGACGUCGuagcCGCaggaGGCGCUg -3'
miRNA:   3'- aGUGuGCUGUUUGCAGU----GCG----UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 137296 0.72 0.82677
Target:  5'- -aGCGCGACAAGCGcCuuGUccGCGCCg -3'
miRNA:   3'- agUGUGCUGUUUGCaGugCGu-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 112024 0.72 0.82677
Target:  5'- cUACACG-CAAACcugCGCGC-GCGCCg -3'
miRNA:   3'- aGUGUGCuGUUUGca-GUGCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 122662 0.73 0.781884
Target:  5'- gCGCGCuGACAuuCGUCGCGaUGGcCGCCg -3'
miRNA:   3'- aGUGUG-CUGUuuGCAGUGC-GUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 81750 0.73 0.781884
Target:  5'- uUCugGCGGCAagaagcacgaGACGUgCGCGCAGCauaCCg -3'
miRNA:   3'- -AGugUGCUGU----------UUGCA-GUGCGUCGc--GG- -5'
24382 3' -52.3 NC_005264.1 + 119650 0.73 0.781884
Target:  5'- cCGC-CGGCccGCGUCGCagGCAGCGCg -3'
miRNA:   3'- aGUGuGCUGuuUGCAGUG--CGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 17024 0.73 0.781884
Target:  5'- -aAgGCGGCGAuCGUCGCcaGCAGCGCg -3'
miRNA:   3'- agUgUGCUGUUuGCAGUG--CGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 13957 0.73 0.791173
Target:  5'- cCACGCGGCGAcgaggagacgaGCGagACGCGGgGUCg -3'
miRNA:   3'- aGUGUGCUGUU-----------UGCagUGCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 78606 0.73 0.791173
Target:  5'- cCACGCGGUAGGCaagCuCGCGGCGCCu -3'
miRNA:   3'- aGUGUGCUGUUUGca-GuGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 149649 0.73 0.791173
Target:  5'- -gGCgGCGACGGAUccgCGCGCAGCGCg -3'
miRNA:   3'- agUG-UGCUGUUUGca-GUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 156690 0.73 0.800316
Target:  5'- gCACGCGAUGcgcGACGggCGCGCGGC-CCu -3'
miRNA:   3'- aGUGUGCUGU---UUGCa-GUGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 10536 0.73 0.809302
Target:  5'- gUCGCGCGACGAACugaagaaacUUGCGCAGgCGCg -3'
miRNA:   3'- -AGUGUGCUGUUUGc--------AGUGCGUC-GCGg -5'
24382 3' -52.3 NC_005264.1 + 71855 0.73 0.809302
Target:  5'- gUCGCgGCGGCGguguuccgcGACGgCACGCGgGCGCCc -3'
miRNA:   3'- -AGUG-UGCUGU---------UUGCaGUGCGU-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 48428 0.72 0.818122
Target:  5'- ----gUGAUAGACGUCGUGCAGCGCa -3'
miRNA:   3'- aguguGCUGUUUGCAGUGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 9383 0.72 0.82677
Target:  5'- -aGCGCGAUuauGAgGUCcucgUGCAGCGCCa -3'
miRNA:   3'- agUGUGCUGu--UUgCAGu---GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 24503 0.72 0.82677
Target:  5'- uUCGgGCGcCu--UGUCGCGCAcGCGCCa -3'
miRNA:   3'- -AGUgUGCuGuuuGCAGUGCGU-CGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.