miRNA display CGI


Results 41 - 60 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 136727 0.66 0.983142
Target:  5'- cCGCGCcACGAGC--CGCGCGGUgGCCa -3'
miRNA:   3'- aGUGUGcUGUUUGcaGUGCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 159533 0.66 0.987793
Target:  5'- cUUGCACGGCGcGCGauccCGCGCgagcucacgacucuGGCGCUg -3'
miRNA:   3'- -AGUGUGCUGUuUGCa---GUGCG--------------UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 112301 0.66 0.989643
Target:  5'- -aGCuuCGACAGGCcucUugGCAGCGCa -3'
miRNA:   3'- agUGu-GCUGUUUGca-GugCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 4380 0.66 0.984459
Target:  5'- cCGCccCGGCAaaaccGAUGUCuccggcgcugagcaGCGCAGUGCCc -3'
miRNA:   3'- aGUGu-GCUGU-----UUGCAG--------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 29465 0.66 0.989643
Target:  5'- cCACGCGGauugggGGGCGgugcaGCGCAGgGCUa -3'
miRNA:   3'- aGUGUGCUg-----UUUGCag---UGCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 147798 0.67 0.981117
Target:  5'- -uGCGCGACGGAgGUgAgGUAG-GCCu -3'
miRNA:   3'- agUGUGCUGUUUgCAgUgCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 67628 0.66 0.989643
Target:  5'- cCACGCGggcGCAGGggUGUCcuGCGCGGC-CCg -3'
miRNA:   3'- aGUGUGC---UGUUU--GCAG--UGCGUCGcGG- -5'
24382 3' -52.3 NC_005264.1 + 55621 0.67 0.981117
Target:  5'- gCugGCGcCGAAUGcCAacCGCGcGCGCCg -3'
miRNA:   3'- aGugUGCuGUUUGCaGU--GCGU-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 141962 0.67 0.981117
Target:  5'- -gAgACGACcaagaccAGAgucuuucuccuuuuaGUCGCGCAGCGCCg -3'
miRNA:   3'- agUgUGCUG-------UUUg--------------CAGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 82352 0.66 0.982947
Target:  5'- aCGCACGugugccagGCAGgcGCGUCgauccggugccggGCGCAGgGCUa -3'
miRNA:   3'- aGUGUGC--------UGUU--UGCAG-------------UGCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 98690 0.66 0.983142
Target:  5'- gCACAcCGGC---CGgauCGCGGCGCCg -3'
miRNA:   3'- aGUGU-GCUGuuuGCaguGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 14531 0.66 0.983142
Target:  5'- cCAUACGaACAccGGCGcgCACGC-GCGCg -3'
miRNA:   3'- aGUGUGC-UGU--UUGCa-GUGCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 96003 0.66 0.983142
Target:  5'- gUCGgGCGAC-GGCGUCcgacaagaACGCAGUaacuauagacGCCg -3'
miRNA:   3'- -AGUgUGCUGuUUGCAG--------UGCGUCG----------CGG- -5'
24382 3' -52.3 NC_005264.1 + 118973 0.66 0.984999
Target:  5'- -gGCgACGACGaaGACGUCuuugcCGgcccCAGCGCCa -3'
miRNA:   3'- agUG-UGCUGU--UUGCAGu----GC----GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 69395 0.66 0.984999
Target:  5'- -gAUACGAUggGCGgguaggCGCGCcuGcCGCCg -3'
miRNA:   3'- agUGUGCUGuuUGCa-----GUGCGu-C-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 134542 0.66 0.986533
Target:  5'- -gACGCGcccGCAGAaggccaaguacccCGUCACGaccuGCGCCa -3'
miRNA:   3'- agUGUGC---UGUUU-------------GCAGUGCgu--CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 110385 0.66 0.986696
Target:  5'- cCGCcgACGGCGGGCG-CAUGCuGaCGCUg -3'
miRNA:   3'- aGUG--UGCUGUUUGCaGUGCGuC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 116270 0.66 0.988241
Target:  5'- aCGCGCGACuuggaagcCGUgGCGCGGgCGgCu -3'
miRNA:   3'- aGUGUGCUGuuu-----GCAgUGCGUC-GCgG- -5'
24382 3' -52.3 NC_005264.1 + 156530 0.66 0.988241
Target:  5'- cCACGCGAagccuCGcCGCGCAaGUGCa -3'
miRNA:   3'- aGUGUGCUguuu-GCaGUGCGU-CGCGg -5'
24382 3' -52.3 NC_005264.1 + 127810 0.66 0.989643
Target:  5'- gUCGCGCGAgcCAucucccgacAGCGUUGCcuccGCGGCgGCCg -3'
miRNA:   3'- -AGUGUGCU--GU---------UUGCAGUG----CGUCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.