miRNA display CGI


Results 61 - 80 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 96003 0.66 0.983142
Target:  5'- gUCGgGCGAC-GGCGUCcgacaagaACGCAGUaacuauagacGCCg -3'
miRNA:   3'- -AGUgUGCUGuUUGCAG--------UGCGUCG----------CGG- -5'
24382 3' -52.3 NC_005264.1 + 158065 0.66 0.983142
Target:  5'- -uGCGCGAacGGCGcCGCGCagaaGGCGCa -3'
miRNA:   3'- agUGUGCUguUUGCaGUGCG----UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 51983 0.66 0.989643
Target:  5'- gUCGCuguaGCuauuGCGGACGUCGCGCgcggAGCGaCCc -3'
miRNA:   3'- -AGUG----UGc---UGUUUGCAGUGCG----UCGC-GG- -5'
24382 3' -52.3 NC_005264.1 + 17281 0.66 0.989643
Target:  5'- gCGCugGGCAAACaugguggccacgGUUAcCGCuAGCGCg -3'
miRNA:   3'- aGUGugCUGUUUG------------CAGU-GCG-UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 50334 0.66 0.988241
Target:  5'- gUACGCGGCGucgaccuUGUCcUGCGGCaGCCc -3'
miRNA:   3'- aGUGUGCUGUuu-----GCAGuGCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 67468 0.66 0.988241
Target:  5'- cCACGCcuGGCAGuuugGCGgCACGCGcCGCCc -3'
miRNA:   3'- aGUGUG--CUGUU----UGCaGUGCGUcGCGG- -5'
24382 3' -52.3 NC_005264.1 + 107885 0.66 0.986696
Target:  5'- aCAuCAUGGCAgcuAGCGgCGCGguGCGUa -3'
miRNA:   3'- aGU-GUGCUGU---UUGCaGUGCguCGCGg -5'
24382 3' -52.3 NC_005264.1 + 38043 0.66 0.985696
Target:  5'- -uGCACGACGGucGCGUgggucUcccagcuuuuuucuuGCGCGGCGUCa -3'
miRNA:   3'- agUGUGCUGUU--UGCA-----G---------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 68149 0.66 0.984999
Target:  5'- aC-CACGGCcguuauguGAACGU--UGCGGCGCCc -3'
miRNA:   3'- aGuGUGCUG--------UUUGCAguGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 69350 0.66 0.984999
Target:  5'- -gACGCGcCGGcCGcCA-GCAGCGCCu -3'
miRNA:   3'- agUGUGCuGUUuGCaGUgCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 153615 0.67 0.97117
Target:  5'- aCGCGCGugGuagcGGCGUUuCGCAGaaaguacaaCGCCa -3'
miRNA:   3'- aGUGUGCugU----UUGCAGuGCGUC---------GCGG- -5'
24382 3' -52.3 NC_005264.1 + 5629 0.67 0.973949
Target:  5'- cCGCGCGACgcuAggUGUCcccacaGCGCGGCGgUa -3'
miRNA:   3'- aGUGUGCUG---UuuGCAG------UGCGUCGCgG- -5'
24382 3' -52.3 NC_005264.1 + 124769 0.66 0.982947
Target:  5'- -aGCACGGCGGGuaggcauUGUgAgaGCGGCGCCu -3'
miRNA:   3'- agUGUGCUGUUU-------GCAgUg-CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 36748 0.67 0.981117
Target:  5'- -aGCGCGAC-GGCGcCgGC-CGGCGCCg -3'
miRNA:   3'- agUGUGCUGuUUGCaG-UGcGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 55621 0.67 0.981117
Target:  5'- gCugGCGcCGAAUGcCAacCGCGcGCGCCg -3'
miRNA:   3'- aGugUGCuGUUUGCaGU--GCGU-CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 147798 0.67 0.981117
Target:  5'- -uGCGCGACGGAgGUgAgGUAG-GCCu -3'
miRNA:   3'- agUGUGCUGUUUgCAgUgCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 2477 0.67 0.980905
Target:  5'- uUCGCGgcugcuuCGACGAugGUCG-GCGG-GCCu -3'
miRNA:   3'- -AGUGU-------GCUGUUugCAGUgCGUCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 143300 0.67 0.978915
Target:  5'- cUCGCucCGGC-AACG-UugGCGGCgGCCg -3'
miRNA:   3'- -AGUGu-GCUGuUUGCaGugCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 83531 0.67 0.976528
Target:  5'- -aAUGCGGCGAGCGacaugaccccgCACGCGGCGa- -3'
miRNA:   3'- agUGUGCUGUUUGCa----------GUGCGUCGCgg -5'
24382 3' -52.3 NC_005264.1 + 52877 0.67 0.976528
Target:  5'- gCACACGcGCGAGCGagGgGCuGCGUg -3'
miRNA:   3'- aGUGUGC-UGUUUGCagUgCGuCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.