miRNA display CGI


Results 81 - 100 of 451 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 131685 0.66 0.982947
Target:  5'- -gGCACGucggcucGCAAGCGUagcgugggccUGCGCGGCGUUg -3'
miRNA:   3'- agUGUGC-------UGUUUGCA----------GUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 119219 0.67 0.981117
Target:  5'- aCGCGCGACcacgcGAgGUUugGC-GCGCa -3'
miRNA:   3'- aGUGUGCUGu----UUgCAGugCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 40030 0.67 0.981117
Target:  5'- aCGCAgauCGGCGGcgGUCGaccaagggccCGCAGCGCCc -3'
miRNA:   3'- aGUGU---GCUGUUugCAGU----------GCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 74232 0.67 0.981117
Target:  5'- cUCGCACGu--AGCGcgCugGCcGCGCUc -3'
miRNA:   3'- -AGUGUGCuguUUGCa-GugCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 101338 0.67 0.980691
Target:  5'- aCGCGCGGCGcuagccgagaccGCGgggCGCGuCGGCGCg -3'
miRNA:   3'- aGUGUGCUGUu-----------UGCa--GUGC-GUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 83531 0.67 0.976528
Target:  5'- -aAUGCGGCGAGCGacaugaccccgCACGCGGCGa- -3'
miRNA:   3'- agUGUGCUGUUUGCa----------GUGCGUCGCgg -5'
24382 3' -52.3 NC_005264.1 + 52877 0.67 0.976528
Target:  5'- gCACACGcGCGAGCGagGgGCuGCGUg -3'
miRNA:   3'- aGUGUGC-UGUUUGCagUgCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 69350 0.66 0.984999
Target:  5'- -gACGCGcCGGcCGcCA-GCAGCGCCu -3'
miRNA:   3'- agUGUGCuGUUuGCaGUgCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 68149 0.66 0.984999
Target:  5'- aC-CACGGCcguuauguGAACGU--UGCGGCGCCc -3'
miRNA:   3'- aGuGUGCUG--------UUUGCAguGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 38043 0.66 0.985696
Target:  5'- -uGCACGACGGucGCGUgggucUcccagcuuuuuucuuGCGCGGCGUCa -3'
miRNA:   3'- agUGUGCUGUU--UGCA-----G---------------UGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 130273 0.67 0.97117
Target:  5'- -uGCGCGACGuuGCGgcggCuacCGCGGCaGCCa -3'
miRNA:   3'- agUGUGCUGUu-UGCa---Gu--GCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 93777 0.68 0.968184
Target:  5'- aUCugGCGAaAGGCGUauuUGCGGCGUg -3'
miRNA:   3'- -AGugUGCUgUUUGCAgu-GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 106522 0.68 0.968184
Target:  5'- -uGCGCGAC-GGCGgcaGCGCGGcCGCg -3'
miRNA:   3'- agUGUGCUGuUUGCag-UGCGUC-GCGg -5'
24382 3' -52.3 NC_005264.1 + 71392 0.68 0.964985
Target:  5'- cCGCGCGG--AGCGUCAuCGCcucuAGgGCCa -3'
miRNA:   3'- aGUGUGCUguUUGCAGU-GCG----UCgCGG- -5'
24382 3' -52.3 NC_005264.1 + 44261 0.68 0.964985
Target:  5'- -uGCuguuCGGC--GCGUCACGCcGCGCg -3'
miRNA:   3'- agUGu---GCUGuuUGCAGUGCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 51983 0.66 0.989643
Target:  5'- gUCGCuguaGCuauuGCGGACGUCGCGCgcggAGCGaCCc -3'
miRNA:   3'- -AGUG----UGc---UGUUUGCAGUGCG----UCGC-GG- -5'
24382 3' -52.3 NC_005264.1 + 17281 0.66 0.989643
Target:  5'- gCGCugGGCAAACaugguggccacgGUUAcCGCuAGCGCg -3'
miRNA:   3'- aGUGugCUGUUUG------------CAGU-GCG-UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 50334 0.66 0.988241
Target:  5'- gUACGCGGCGucgaccuUGUCcUGCGGCaGCCc -3'
miRNA:   3'- aGUGUGCUGUuu-----GCAGuGCGUCG-CGG- -5'
24382 3' -52.3 NC_005264.1 + 67468 0.66 0.988241
Target:  5'- cCACGCcuGGCAGuuugGCGgCACGCGcCGCCc -3'
miRNA:   3'- aGUGUG--CUGUU----UGCaGUGCGUcGCGG- -5'
24382 3' -52.3 NC_005264.1 + 107885 0.66 0.986696
Target:  5'- aCAuCAUGGCAgcuAGCGgCGCGguGCGUa -3'
miRNA:   3'- aGU-GUGCUGU---UUGCaGUGCguCGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.