miRNA display CGI


Results 21 - 40 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 3' -52.3 NC_005264.1 + 52935 0.66 0.988241
Target:  5'- aUUGCAUGGCc-GCGcC-CGCGGCGCa -3'
miRNA:   3'- -AGUGUGCUGuuUGCaGuGCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 137820 0.66 0.988241
Target:  5'- cCGgGCGccuCAGGagaGgCAUGCAGCGCCu -3'
miRNA:   3'- aGUgUGCu--GUUUg--CaGUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 67468 0.66 0.988241
Target:  5'- cCACGCcuGGCAGuuugGCGgCACGCGcCGCCc -3'
miRNA:   3'- aGUGUG--CUGUU----UGCaGUGCGUcGCGG- -5'
24382 3' -52.3 NC_005264.1 + 146512 0.66 0.988241
Target:  5'- cCGCGCGGuucCAGagcuacGCGUCGagagUGCGGCGCa -3'
miRNA:   3'- aGUGUGCU---GUU------UGCAGU----GCGUCGCGg -5'
24382 3' -52.3 NC_005264.1 + 88137 0.66 0.988241
Target:  5'- gCugAUGGCcgguuacuucaAGACGUCGCcgGUGGCGCUa -3'
miRNA:   3'- aGugUGCUG-----------UUUGCAGUG--CGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 157048 0.66 0.988241
Target:  5'- aCAgGCG-CGAACag-ACGUGGCGCCa -3'
miRNA:   3'- aGUgUGCuGUUUGcagUGCGUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 116270 0.66 0.988241
Target:  5'- aCGCGCGACuuggaagcCGUgGCGCGGgCGgCu -3'
miRNA:   3'- aGUGUGCUGuuu-----GCAgUGCGUC-GCgG- -5'
24382 3' -52.3 NC_005264.1 + 73062 0.66 0.988241
Target:  5'- gCACAUgGACGGAUGgccCGCGCGGCa-- -3'
miRNA:   3'- aGUGUG-CUGUUUGCa--GUGCGUCGcgg -5'
24382 3' -52.3 NC_005264.1 + 98204 0.66 0.988241
Target:  5'- cUUAUugGACuacugcaacGGCGUCGgGCcGCGCUg -3'
miRNA:   3'- -AGUGugCUGu--------UUGCAGUgCGuCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 112504 0.66 0.988241
Target:  5'- cCGCAgGACAAG-GUCgACGCcGCGUa -3'
miRNA:   3'- aGUGUgCUGUUUgCAG-UGCGuCGCGg -5'
24382 3' -52.3 NC_005264.1 + 33294 0.66 0.987944
Target:  5'- cCACGCGGCGAcgccuaagcccacGCccgcagugguuccGUCGCcucCGGCGCCg -3'
miRNA:   3'- aGUGUGCUGUU-------------UG-------------CAGUGc--GUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 159533 0.66 0.987793
Target:  5'- cUUGCACGGCGcGCGauccCGCGCgagcucacgacucuGGCGCUg -3'
miRNA:   3'- -AGUGUGCUGUuUGCa---GUGCG--------------UCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 88519 0.66 0.986696
Target:  5'- aUCACcgACGACGAcuCGUuggcCAUGCcgcGCGCCa -3'
miRNA:   3'- -AGUG--UGCUGUUu-GCA----GUGCGu--CGCGG- -5'
24382 3' -52.3 NC_005264.1 + 11648 0.66 0.986696
Target:  5'- -aGCGCGGCAGGgcugcugucguCGUCGCGCAauuCGaCCg -3'
miRNA:   3'- agUGUGCUGUUU-----------GCAGUGCGUc--GC-GG- -5'
24382 3' -52.3 NC_005264.1 + 79913 0.66 0.986696
Target:  5'- -uGCGCGugGccGACGUC-UGCGGCGg- -3'
miRNA:   3'- agUGUGCugU--UUGCAGuGCGUCGCgg -5'
24382 3' -52.3 NC_005264.1 + 117513 0.66 0.986696
Target:  5'- -gGCGCGGC--GCGUC-UGCGGuCGCUc -3'
miRNA:   3'- agUGUGCUGuuUGCAGuGCGUC-GCGG- -5'
24382 3' -52.3 NC_005264.1 + 80680 0.66 0.986696
Target:  5'- cCGCACGGCAGuuugaGUCACcuagGCaacgGGCGCg -3'
miRNA:   3'- aGUGUGCUGUUug---CAGUG----CG----UCGCGg -5'
24382 3' -52.3 NC_005264.1 + 19407 0.66 0.986696
Target:  5'- -gACAUGAUggGgGagGCGaGGCGCCg -3'
miRNA:   3'- agUGUGCUGuuUgCagUGCgUCGCGG- -5'
24382 3' -52.3 NC_005264.1 + 152004 0.66 0.986696
Target:  5'- -gACACG-CGGGC-UCGCGCAuauCGCCa -3'
miRNA:   3'- agUGUGCuGUUUGcAGUGCGUc--GCGG- -5'
24382 3' -52.3 NC_005264.1 + 104993 0.66 0.986696
Target:  5'- -gGCGCuGACGAcCGUU-UGCAGCGCa -3'
miRNA:   3'- agUGUG-CUGUUuGCAGuGCGUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.