miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 5' -57.6 NC_005264.1 + 122592 1.05 0.003651
Target:  5'- gUUGGGGUACCGCACGUCCACGACAGUa -3'
miRNA:   3'- -AACCCCAUGGCGUGCAGGUGCUGUCA- -5'
24382 5' -57.6 NC_005264.1 + 128854 0.77 0.286202
Target:  5'- aUGGGccGCCGCACGUUCGCGAgAGg -3'
miRNA:   3'- aACCCcaUGGCGUGCAGGUGCUgUCa -5'
24382 5' -57.6 NC_005264.1 + 9828 0.77 0.286202
Target:  5'- aUGGGccGCCGCACGUUCGCGAgAGg -3'
miRNA:   3'- aACCCcaUGGCGUGCAGGUGCUgUCa -5'
24382 5' -57.6 NC_005264.1 + 123715 0.74 0.407972
Target:  5'- -cGGGGcgagUGgCGcCGCGUCCACGACAGc -3'
miRNA:   3'- aaCCCC----AUgGC-GUGCAGGUGCUGUCa -5'
24382 5' -57.6 NC_005264.1 + 4688 0.74 0.407972
Target:  5'- -cGGGGcgagUGgCGcCGCGUCCACGACAGc -3'
miRNA:   3'- aaCCCC----AUgGC-GUGCAGGUGCUGUCa -5'
24382 5' -57.6 NC_005264.1 + 132943 0.74 0.416588
Target:  5'- -cGGGGUagcGCCGCACGccUUCGCGGCAaGUa -3'
miRNA:   3'- aaCCCCA---UGGCGUGC--AGGUGCUGU-CA- -5'
24382 5' -57.6 NC_005264.1 + 120213 0.72 0.508365
Target:  5'- -gGGGGUacgcagcggACCGgGCGUCCGCGGCc-- -3'
miRNA:   3'- aaCCCCA---------UGGCgUGCAGGUGCUGuca -5'
24382 5' -57.6 NC_005264.1 + 1186 0.72 0.508365
Target:  5'- -gGGGGUacgcagcggACCGgGCGUCCGCGGCc-- -3'
miRNA:   3'- aaCCCCA---------UGGCgUGCAGGUGCUGuca -5'
24382 5' -57.6 NC_005264.1 + 116488 0.72 0.52777
Target:  5'- -cGGGGaUACCGCGgGUCCugGAauCGGc -3'
miRNA:   3'- aaCCCC-AUGGCGUgCAGGugCU--GUCa -5'
24382 5' -57.6 NC_005264.1 + 116205 0.7 0.647179
Target:  5'- -cGGGGaUGCCGaauucuucggccaCGCGgucCCACGACGGUg -3'
miRNA:   3'- aaCCCC-AUGGC-------------GUGCa--GGUGCUGUCA- -5'
24382 5' -57.6 NC_005264.1 + 48339 0.7 0.648193
Target:  5'- cUGGGGaguUGgCGCACG-CCAUGGCGGc -3'
miRNA:   3'- aACCCC---AUgGCGUGCaGGUGCUGUCa -5'
24382 5' -57.6 NC_005264.1 + 76247 0.69 0.668432
Target:  5'- cUUGGGuGUggaGCCGUgacuGCGgucgCCACGGCAGUc -3'
miRNA:   3'- -AACCC-CA---UGGCG----UGCa---GGUGCUGUCA- -5'
24382 5' -57.6 NC_005264.1 + 4508 0.69 0.678512
Target:  5'- -aGGGGggACUGgGCGUCCGCGGaGGg -3'
miRNA:   3'- aaCCCCa-UGGCgUGCAGGUGCUgUCa -5'
24382 5' -57.6 NC_005264.1 + 123535 0.69 0.678512
Target:  5'- -aGGGGggACUGgGCGUCCGCGGaGGg -3'
miRNA:   3'- aaCCCCa-UGGCgUGCAGGUGCUgUCa -5'
24382 5' -57.6 NC_005264.1 + 53157 0.69 0.688555
Target:  5'- -cGGcGGUACUGCuCGUCUugGGCgAGUu -3'
miRNA:   3'- aaCC-CCAUGGCGuGCAGGugCUG-UCA- -5'
24382 5' -57.6 NC_005264.1 + 51539 0.69 0.708494
Target:  5'- cUUGGGGUACUugaacuugccgaGCACGgCCugGACGu- -3'
miRNA:   3'- -AACCCCAUGG------------CGUGCaGGugCUGUca -5'
24382 5' -57.6 NC_005264.1 + 133445 0.69 0.708494
Target:  5'- -cGGcGGUGCCGCACGcUUACGGCu-- -3'
miRNA:   3'- aaCC-CCAUGGCGUGCaGGUGCUGuca -5'
24382 5' -57.6 NC_005264.1 + 25542 0.68 0.763681
Target:  5'- --uGGGUGCCGUACGcCCGCGucgccgccaacgccGCGGa -3'
miRNA:   3'- aacCCCAUGGCGUGCaGGUGC--------------UGUCa -5'
24382 5' -57.6 NC_005264.1 + 23016 0.68 0.766497
Target:  5'- uUUGcGGGUACgCGUuuCGUcCCGCGACGGc -3'
miRNA:   3'- -AAC-CCCAUG-GCGu-GCA-GGUGCUGUCa -5'
24382 5' -57.6 NC_005264.1 + 28294 0.67 0.77488
Target:  5'- -cGGGGUACUuggccuucugcggGCGCGUCUuugaguaucuuuGCGGCGGc -3'
miRNA:   3'- aaCCCCAUGG-------------CGUGCAGG------------UGCUGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.