miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24382 5' -57.6 NC_005264.1 + 120213 0.72 0.508365
Target:  5'- -gGGGGUacgcagcggACCGgGCGUCCGCGGCc-- -3'
miRNA:   3'- aaCCCCA---------UGGCgUGCAGGUGCUGuca -5'
24382 5' -57.6 NC_005264.1 + 1186 0.72 0.508365
Target:  5'- -gGGGGUacgcagcggACCGgGCGUCCGCGGCc-- -3'
miRNA:   3'- aaCCCCA---------UGGCgUGCAGGUGCUGuca -5'
24382 5' -57.6 NC_005264.1 + 132943 0.74 0.416588
Target:  5'- -cGGGGUagcGCCGCACGccUUCGCGGCAaGUa -3'
miRNA:   3'- aaCCCCA---UGGCGUGC--AGGUGCUGU-CA- -5'
24382 5' -57.6 NC_005264.1 + 123715 0.74 0.407972
Target:  5'- -cGGGGcgagUGgCGcCGCGUCCACGACAGc -3'
miRNA:   3'- aaCCCC----AUgGC-GUGCAGGUGCUGUCa -5'
24382 5' -57.6 NC_005264.1 + 4688 0.74 0.407972
Target:  5'- -cGGGGcgagUGgCGcCGCGUCCACGACAGc -3'
miRNA:   3'- aaCCCC----AUgGC-GUGCAGGUGCUGUCa -5'
24382 5' -57.6 NC_005264.1 + 9828 0.77 0.286202
Target:  5'- aUGGGccGCCGCACGUUCGCGAgAGg -3'
miRNA:   3'- aACCCcaUGGCGUGCAGGUGCUgUCa -5'
24382 5' -57.6 NC_005264.1 + 128854 0.77 0.286202
Target:  5'- aUGGGccGCCGCACGUUCGCGAgAGg -3'
miRNA:   3'- aACCCcaUGGCGUGCAGGUGCUgUCa -5'
24382 5' -57.6 NC_005264.1 + 122592 1.05 0.003651
Target:  5'- gUUGGGGUACCGCACGUCCACGACAGUa -3'
miRNA:   3'- -AACCCCAUGGCGUGCAGGUGCUGUCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.