miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24383 5' -56.6 NC_005264.1 + 13620 0.66 0.881295
Target:  5'- gGGACGCG-GGCa--GGGGCGGCGgUa -3'
miRNA:   3'- aCCUGUGUaCUGgguUCCUGCCGCgG- -5'
24383 5' -56.6 NC_005264.1 + 72761 0.66 0.881295
Target:  5'- cGuGACGCGUGcGCCguAGcGACGGUGUUc -3'
miRNA:   3'- aC-CUGUGUAC-UGGguUC-CUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 38271 0.66 0.881295
Target:  5'- cGGugACGUcaGuCCC--GGACGGCGgCg -3'
miRNA:   3'- aCCugUGUA--CuGGGuuCCUGCCGCgG- -5'
24383 5' -56.6 NC_005264.1 + 157298 0.66 0.881295
Target:  5'- cGGugACGUcaGuCCC--GGACGGCGgCg -3'
miRNA:   3'- aCCugUGUA--CuGGGuuCCUGCCGCgG- -5'
24383 5' -56.6 NC_005264.1 + 132647 0.66 0.881295
Target:  5'- gGGACGCG-GGCa--GGGGCGGCGgUa -3'
miRNA:   3'- aCCUGUGUaCUGgguUCCUGCCGCgG- -5'
24383 5' -56.6 NC_005264.1 + 151740 0.66 0.880599
Target:  5'- aGGAuucguacCAUGUGACCUcauuugcauugaGGGGGCGGCacccGCCu -3'
miRNA:   3'- aCCU-------GUGUACUGGG------------UUCCUGCCG----CGG- -5'
24383 5' -56.6 NC_005264.1 + 32714 0.66 0.880599
Target:  5'- aGGAuucguacCAUGUGACCUcauuugcauugaGGGGGCGGCacccGCCu -3'
miRNA:   3'- aCCU-------GUGUACUGGG------------UUCCUGCCG----CGG- -5'
24383 5' -56.6 NC_005264.1 + 128989 0.67 0.874235
Target:  5'- gGGACuGCcgGACCCGu--GCGGCgauGCCg -3'
miRNA:   3'- aCCUG-UGuaCUGGGUuccUGCCG---CGG- -5'
24383 5' -56.6 NC_005264.1 + 11695 0.67 0.873517
Target:  5'- cGGAuuaguacCAUGUGACauaauuugcaUCGauGGGGCGGCGCCc -3'
miRNA:   3'- aCCU-------GUGUACUG----------GGU--UCCUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 21699 0.67 0.866962
Target:  5'- cGGACcucguaACAUGACCCc-GGcCGuGCGCg -3'
miRNA:   3'- aCCUG------UGUACUGGGuuCCuGC-CGCGg -5'
24383 5' -56.6 NC_005264.1 + 81854 0.67 0.866224
Target:  5'- aGGcCACGUcGGCgUCGAGGAagaaauuggucgaUGGCGCCu -3'
miRNA:   3'- aCCuGUGUA-CUG-GGUUCCU-------------GCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 146389 0.67 0.859484
Target:  5'- cGGAacgAUGACCCAcgaugaccucguAGGGCgGGUGCUg -3'
miRNA:   3'- aCCUgugUACUGGGU------------UCCUG-CCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 125671 0.67 0.859484
Target:  5'- gGGGCACAUG-UCCGgaagcuccggcAGaGAUccuGGCGCCa -3'
miRNA:   3'- aCCUGUGUACuGGGU-----------UC-CUG---CCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 84327 0.67 0.859484
Target:  5'- aGcGGCGCGU-ACCC-AGcGCGGUGCCa -3'
miRNA:   3'- aC-CUGUGUAcUGGGuUCcUGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 6644 0.67 0.859484
Target:  5'- gGGGCACAUG-UCCGgaagcuccggcAGaGAUccuGGCGCCa -3'
miRNA:   3'- aCCUGUGUACuGGGU-----------UC-CUG---CCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 119493 0.67 0.858726
Target:  5'- gUGGAUguggcugcgcaggGCGUGcUCCGAGG-CGGCaGCCc -3'
miRNA:   3'- -ACCUG-------------UGUACuGGGUUCCuGCCG-CGG- -5'
24383 5' -56.6 NC_005264.1 + 26110 0.67 0.851806
Target:  5'- cUGGccacCGCGcGGCUCGuGGcGCGGCGCCg -3'
miRNA:   3'- -ACCu---GUGUaCUGGGUuCC-UGCCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 156277 0.67 0.851806
Target:  5'- gGGGCGCAUcACCgu-GGACgaGGCGCUc -3'
miRNA:   3'- aCCUGUGUAcUGGguuCCUG--CCGCGG- -5'
24383 5' -56.6 NC_005264.1 + 78774 0.67 0.851806
Target:  5'- ---cCGCAUGAgCCAgGGGGCGGUGUg -3'
miRNA:   3'- accuGUGUACUgGGU-UCCUGCCGCGg -5'
24383 5' -56.6 NC_005264.1 + 155429 0.67 0.851806
Target:  5'- -cGGCGCAcGAaCCAAuGGAcgaCGGCGCCg -3'
miRNA:   3'- acCUGUGUaCUgGGUU-CCU---GCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.