miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24384 3' -59.5 NC_005264.1 + 120976 0.67 0.681618
Target:  5'- -cGCGGccguugCCCCCccccccgAGCUCCCAuauGCACu -3'
miRNA:   3'- cuCGCCaa----GGGGG-------UCGGGGGUu--UGUG- -5'
24384 3' -59.5 NC_005264.1 + 121273 1.1 0.00117
Target:  5'- cGAGCGGUUCCCCCAGCCCCCAAACACg -3'
miRNA:   3'- -CUCGCCAAGGGGGUCGGGGGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 122772 0.7 0.49478
Target:  5'- gGAGCGGggCCUCUuGCCgCCgGGGCGCu -3'
miRNA:   3'- -CUCGCCaaGGGGGuCGG-GGgUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 123022 0.66 0.778729
Target:  5'- aGGGCGGcacaugCCUCCucGCCCaCCAGGgGCu -3'
miRNA:   3'- -CUCGCCaa----GGGGGu-CGGG-GGUUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 127661 0.67 0.692548
Target:  5'- cGGGCuGGggacgCCCCgAaccuuGCCCaCCAGACACa -3'
miRNA:   3'- -CUCG-CCaa---GGGGgU-----CGGG-GGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 128431 0.66 0.769545
Target:  5'- -cGCaGGcaaUCCCCC-GCCCCCAuuAGCGa -3'
miRNA:   3'- cuCG-CCa--AGGGGGuCGGGGGU--UUGUg -5'
24384 3' -59.5 NC_005264.1 + 128543 0.68 0.652604
Target:  5'- -cGCGGcgCCCUCgaggGGCCCUCGAACu- -3'
miRNA:   3'- cuCGCCaaGGGGG----UCGGGGGUUUGug -5'
24384 3' -59.5 NC_005264.1 + 129549 0.66 0.769545
Target:  5'- cGAGCGGgUCCUgugcggcgCC-GCCCUCAGggGCGCg -3'
miRNA:   3'- -CUCGCCaAGGG--------GGuCGGGGGUU--UGUG- -5'
24384 3' -59.5 NC_005264.1 + 129918 0.69 0.602371
Target:  5'- -cGCGGcgCCCCCGcGaCCCCU--GCGCg -3'
miRNA:   3'- cuCGCCaaGGGGGU-C-GGGGGuuUGUG- -5'
24384 3' -59.5 NC_005264.1 + 131670 0.66 0.731713
Target:  5'- -cGCucg-CCCuCCGGCCCCCGucACACg -3'
miRNA:   3'- cuCGccaaGGG-GGUCGGGGGUu-UGUG- -5'
24384 3' -59.5 NC_005264.1 + 132395 0.66 0.750831
Target:  5'- cGAGcCGGggCCCgCGGCuCCCCcGAgACc -3'
miRNA:   3'- -CUC-GCCaaGGGgGUCG-GGGGuUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 133000 0.67 0.67264
Target:  5'- -cGCGGUucUCUCCCAcuuuGCCCCUAcuccgguuccAGCGCc -3'
miRNA:   3'- cuCGCCA--AGGGGGU----CGGGGGU----------UUGUG- -5'
24384 3' -59.5 NC_005264.1 + 133548 0.68 0.61843
Target:  5'- cGGGCGGcgugagguaCCGGCUCCCGGACACc -3'
miRNA:   3'- -CUCGCCaaggg----GGUCGGGGGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 137151 0.67 0.673639
Target:  5'- uGGCGGggcaugcgcgucccgUCCCUUcugcuGCCCCCAGACGu -3'
miRNA:   3'- cUCGCCa--------------AGGGGGu----CGGGGGUUUGUg -5'
24384 3' -59.5 NC_005264.1 + 139761 0.7 0.540896
Target:  5'- -cGCGGgacaugccggcgUCUCCCGGUaCCCCAAGCAa -3'
miRNA:   3'- cuCGCCa-----------AGGGGGUCG-GGGGUUUGUg -5'
24384 3' -59.5 NC_005264.1 + 142307 0.67 0.692548
Target:  5'- -cGCGcUUCUUCguGCCCgCCGGACACa -3'
miRNA:   3'- cuCGCcAAGGGGguCGGG-GGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 143432 0.68 0.641553
Target:  5'- cGGCGccucgccUCCCCCAucaugucgccaauGCgCCCCAAACGCa -3'
miRNA:   3'- cUCGCca-----AGGGGGU-------------CG-GGGGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 149367 0.67 0.671641
Target:  5'- cGAGCuG-UCCCCCgAGUCCCCGcaggagccccuucGGCGCc -3'
miRNA:   3'- -CUCGcCaAGGGGG-UCGGGGGU-------------UUGUG- -5'
24384 3' -59.5 NC_005264.1 + 153795 0.66 0.750831
Target:  5'- uGGCGGUgacuUUCCCCaAGCCaggCgCGAACGCg -3'
miRNA:   3'- cUCGCCA----AGGGGG-UCGGg--G-GUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 153926 0.67 0.682614
Target:  5'- gGAGCGGgcgauuguucCCCCCAGCCUCUg----- -3'
miRNA:   3'- -CUCGCCaa--------GGGGGUCGGGGGuuugug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.