Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24384 | 3' | -59.5 | NC_005264.1 | + | 154557 | 0.68 | 0.652604 |
Target: 5'- -cGCGGaUCuCCCCGGCCUgCAacgaggcgGACACc -3' miRNA: 3'- cuCGCCaAG-GGGGUCGGGgGU--------UUGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 154833 | 0.72 | 0.413669 |
Target: 5'- uGGCGGgcgccUCUgCCGGCCCCgCAAugGCg -3' miRNA: 3'- cUCGCCa----AGGgGGUCGGGG-GUUugUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 159340 | 0.66 | 0.750831 |
Target: 5'- cGGCGaGgaUCCCCuGCCCCCcgcCGCg -3' miRNA: 3'- cUCGC-CaaGGGGGuCGGGGGuuuGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 161757 | 0.69 | 0.582377 |
Target: 5'- cGAGaGGUUCUCCCcGCCCaCCuuggauGGACACg -3' miRNA: 3'- -CUCgCCAAGGGGGuCGGG-GG------UUUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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