miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24384 3' -59.5 NC_005264.1 + 91400 0.69 0.56252
Target:  5'- aGAGUGGUUggCCCUAGCgCCgGGGCACc -3'
miRNA:   3'- -CUCGCCAAg-GGGGUCGgGGgUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 139761 0.7 0.540896
Target:  5'- -cGCGGgacaugccggcgUCUCCCGGUaCCCCAAGCAa -3'
miRNA:   3'- cuCGCCa-----------AGGGGGUCG-GGGGUUUGUg -5'
24384 3' -59.5 NC_005264.1 + 3746 0.7 0.49478
Target:  5'- gGAGCGGggCCUCUuGCCgCCgGGGCGCu -3'
miRNA:   3'- -CUCGCCaaGGGGGuCGG-GGgUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 97974 0.71 0.439817
Target:  5'- -uGCGGgcaaUCUCCCAGCCgCCGGACu- -3'
miRNA:   3'- cuCGCCa---AGGGGGUCGGgGGUUUGug -5'
24384 3' -59.5 NC_005264.1 + 35807 0.72 0.413669
Target:  5'- uGGCGGgcgccUCUgCCGGCCCCgCAAugGCg -3'
miRNA:   3'- cUCGCCa----AGGgGGUCGGGG-GUUugUG- -5'
24384 3' -59.5 NC_005264.1 + 154557 0.68 0.652604
Target:  5'- -cGCGGaUCuCCCCGGCCUgCAacgaggcgGACACc -3'
miRNA:   3'- cuCGCCaAG-GGGGUCGGGgGU--------UUGUG- -5'
24384 3' -59.5 NC_005264.1 + 30340 0.67 0.671641
Target:  5'- cGAGCuG-UCCCCCgAGUCCCCGcaggagccccuucGGCGCc -3'
miRNA:   3'- -CUCGcCaAGGGGG-UCGGGGGU-------------UUGUG- -5'
24384 3' -59.5 NC_005264.1 + 1950 0.67 0.681618
Target:  5'- -cGCGGccguugCCCCCccccccgAGCUCCCAuauGCACu -3'
miRNA:   3'- cuCGCCaa----GGGGG-------UCGGGGGUu--UGUG- -5'
24384 3' -59.5 NC_005264.1 + 3995 0.66 0.778729
Target:  5'- aGGGCGGcacaugCCUCCucGCCCaCCAGGgGCu -3'
miRNA:   3'- -CUCGCCaa----GGGGGu-CGGG-GGUUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 10522 0.66 0.769545
Target:  5'- cGAGCGGgUCCUgugcggcgCC-GCCCUCAGggGCGCg -3'
miRNA:   3'- -CUCGCCaAGGG--------GGuCGGGGGUU--UGUG- -5'
24384 3' -59.5 NC_005264.1 + 107661 0.66 0.769545
Target:  5'- -cGCGGUcgccgCCUUCAGCCgcgCCCAGAgGCc -3'
miRNA:   3'- cuCGCCAa----GGGGGUCGG---GGGUUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 9404 0.66 0.769545
Target:  5'- -cGCaGGcaaUCCCCC-GCCCCCAuuAGCGa -3'
miRNA:   3'- cuCG-CCa--AGGGGGuCGGGGGU--UUGUg -5'
24384 3' -59.5 NC_005264.1 + 13368 0.66 0.750831
Target:  5'- cGAGcCGGggCCCgCGGCuCCCCcGAgACc -3'
miRNA:   3'- -CUC-GCCaaGGGgGUCG-GGGGuUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 40313 0.66 0.750831
Target:  5'- cGGCGaGgaUCCCCuGCCCCCcgcCGCg -3'
miRNA:   3'- cUCGC-CaaGGGGGuCGGGGGuuuGUG- -5'
24384 3' -59.5 NC_005264.1 + 26816 0.66 0.750831
Target:  5'- aAGUGGgccgcgCCgCUCuugAGCCCCCAGACAa -3'
miRNA:   3'- cUCGCCaa----GG-GGG---UCGGGGGUUUGUg -5'
24384 3' -59.5 NC_005264.1 + 153795 0.66 0.750831
Target:  5'- uGGCGGUgacuUUCCCCaAGCCaggCgCGAACGCg -3'
miRNA:   3'- cUCGCCA----AGGGGG-UCGGg--G-GUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 25310 0.66 0.735565
Target:  5'- aAGCGGUcuUCCucgaagucgucguagUugCCGGCCCCCAGAgACu -3'
miRNA:   3'- cUCGCCA--AGG---------------G--GGUCGGGGGUUUgUG- -5'
24384 3' -59.5 NC_005264.1 + 12643 0.66 0.731713
Target:  5'- -cGCucg-CCCuCCGGCCCCCGucACACg -3'
miRNA:   3'- cuCGccaaGGG-GGUCGGGGGUu-UGUG- -5'
24384 3' -59.5 NC_005264.1 + 69872 0.67 0.692548
Target:  5'- -cGUGGUgaUCCCCUGGCauuCCUGAACAUg -3'
miRNA:   3'- cuCGCCA--AGGGGGUCGg--GGGUUUGUG- -5'
24384 3' -59.5 NC_005264.1 + 127661 0.67 0.692548
Target:  5'- cGGGCuGGggacgCCCCgAaccuuGCCCaCCAGACACa -3'
miRNA:   3'- -CUCG-CCaa---GGGGgU-----CGGG-GGUUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.