Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24384 | 3' | -59.5 | NC_005264.1 | + | 18568 | 0.67 | 0.712262 |
Target: 5'- gGAGCGGcaUCCgCCGGCCCa-AGGCAg -3' miRNA: 3'- -CUCGCCa-AGGgGGUCGGGggUUUGUg -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 104113 | 0.67 | 0.701448 |
Target: 5'- uGGGCGacgUCCCCCugguGGCCgCCCGccuaguaAACGCg -3' miRNA: 3'- -CUCGCca-AGGGGG----UCGG-GGGU-------UUGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 142307 | 0.67 | 0.692548 |
Target: 5'- -cGCGcUUCUUCguGCCCgCCGGACACa -3' miRNA: 3'- cuCGCcAAGGGGguCGGG-GGUUUGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 116580 | 0.73 | 0.364359 |
Target: 5'- cGGCGa--CCCCUAaacGCCCCCAGGCGCg -3' miRNA: 3'- cUCGCcaaGGGGGU---CGGGGGUUUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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