Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24384 | 3' | -59.5 | NC_005264.1 | + | 131670 | 0.66 | 0.731713 |
Target: 5'- -cGCucg-CCCuCCGGCCCCCGucACACg -3' miRNA: 3'- cuCGccaaGGG-GGUCGGGGGUu-UGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 88879 | 0.66 | 0.731713 |
Target: 5'- cGAGCGacUUCUUCAGCCCCCuGGGCAa -3' miRNA: 3'- -CUCGCcaAGGGGGUCGGGGG-UUUGUg -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 28826 | 0.67 | 0.721052 |
Target: 5'- gGAGCguauaucGGUUUgCCCGGCCCCUguaGAACu- -3' miRNA: 3'- -CUCG-------CCAAGgGGGUCGGGGG---UUUGug -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 18568 | 0.67 | 0.712262 |
Target: 5'- gGAGCGGcaUCCgCCGGCCCa-AGGCAg -3' miRNA: 3'- -CUCGCCa-AGGgGGUCGGGggUUUGUg -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 104113 | 0.67 | 0.701448 |
Target: 5'- uGGGCGacgUCCCCCugguGGCCgCCCGccuaguaAACGCg -3' miRNA: 3'- -CUCGCca-AGGGGG----UCGG-GGGU-------UUGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 127661 | 0.67 | 0.692548 |
Target: 5'- cGGGCuGGggacgCCCCgAaccuuGCCCaCCAGACACa -3' miRNA: 3'- -CUCG-CCaa---GGGGgU-----CGGG-GGUUUGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 69872 | 0.67 | 0.692548 |
Target: 5'- -cGUGGUgaUCCCCUGGCauuCCUGAACAUg -3' miRNA: 3'- cuCGCCA--AGGGGGUCGg--GGGUUUGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 142307 | 0.67 | 0.692548 |
Target: 5'- -cGCGcUUCUUCguGCCCgCCGGACACa -3' miRNA: 3'- cuCGCcAAGGGGguCGGG-GGUUUGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 153926 | 0.67 | 0.682614 |
Target: 5'- gGAGCGGgcgauuguucCCCCCAGCCUCUg----- -3' miRNA: 3'- -CUCGCCaa--------GGGGGUCGGGGGuuugug -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 120976 | 0.67 | 0.681618 |
Target: 5'- -cGCGGccguugCCCCCccccccgAGCUCCCAuauGCACu -3' miRNA: 3'- cuCGCCaa----GGGGG-------UCGGGGGUu--UGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 1950 | 0.67 | 0.681618 |
Target: 5'- -cGCGGccguugCCCCCccccccgAGCUCCCAuauGCACu -3' miRNA: 3'- cuCGCCaa----GGGGG-------UCGGGGGUu--UGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 137151 | 0.67 | 0.673639 |
Target: 5'- uGGCGGggcaugcgcgucccgUCCCUUcugcuGCCCCCAGACGu -3' miRNA: 3'- cUCGCCa--------------AGGGGGu----CGGGGGUUUGUg -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 133000 | 0.67 | 0.67264 |
Target: 5'- -cGCGGUucUCUCCCAcuuuGCCCCUAcuccgguuccAGCGCc -3' miRNA: 3'- cuCGCCA--AGGGGGU----CGGGGGU----------UUGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 149367 | 0.67 | 0.671641 |
Target: 5'- cGAGCuG-UCCCCCgAGUCCCCGcaggagccccuucGGCGCc -3' miRNA: 3'- -CUCGcCaAGGGGG-UCGGGGGU-------------UUGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 30340 | 0.67 | 0.671641 |
Target: 5'- cGAGCuG-UCCCCCgAGUCCCCGcaggagccccuucGGCGCc -3' miRNA: 3'- -CUCGcCaAGGGGG-UCGGGGGU-------------UUGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 96346 | 0.68 | 0.662634 |
Target: 5'- cGAGCGcg-CCgCgCAGCCCgCCAAGCAUu -3' miRNA: 3'- -CUCGCcaaGGgG-GUCGGG-GGUUUGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 65414 | 0.68 | 0.652604 |
Target: 5'- cGGCGGcgCCCgCAGCgCUcacugCCGAACACa -3' miRNA: 3'- cUCGCCaaGGGgGUCG-GG-----GGUUUGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 154557 | 0.68 | 0.652604 |
Target: 5'- -cGCGGaUCuCCCCGGCCUgCAacgaggcgGACACc -3' miRNA: 3'- cuCGCCaAG-GGGGUCGGGgGU--------UUGUG- -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 128543 | 0.68 | 0.652604 |
Target: 5'- -cGCGGcgCCCUCgaggGGCCCUCGAACu- -3' miRNA: 3'- cuCGCCaaGGGGG----UCGGGGGUUUGug -5' |
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24384 | 3' | -59.5 | NC_005264.1 | + | 9516 | 0.68 | 0.652604 |
Target: 5'- -cGCGGcgCCCUCgaggGGCCCUCGAACu- -3' miRNA: 3'- cuCGCCaaGGGGG----UCGGGGGUUUGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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