miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24384 5' -56.5 NC_005264.1 + 18511 0.66 0.890108
Target:  5'- -cGCuGUCGAGcAugGUGGGGgUcCUCa -3'
miRNA:   3'- aaUGcCAGCUC-UugCACCCCgAcGAG- -5'
24384 5' -56.5 NC_005264.1 + 48044 0.66 0.890108
Target:  5'- -aGCuGUCGAGGcauuucccCGcGGGGCUGCUg -3'
miRNA:   3'- aaUGcCAGCUCUu-------GCaCCCCGACGAg -5'
24384 5' -56.5 NC_005264.1 + 68406 0.66 0.890108
Target:  5'- cUGCGG--GAGGAC---GGGCUGCUCg -3'
miRNA:   3'- aAUGCCagCUCUUGcacCCCGACGAG- -5'
24384 5' -56.5 NC_005264.1 + 47583 0.66 0.88322
Target:  5'- aUAUGGcucgCGGGGACGcguUGGGGgaGaCUCg -3'
miRNA:   3'- aAUGCCa---GCUCUUGC---ACCCCgaC-GAG- -5'
24384 5' -56.5 NC_005264.1 + 53290 0.66 0.880401
Target:  5'- -cGCGGgcuUCGGGGgcaACGggaagucugcccaGGGGCUGCUUg -3'
miRNA:   3'- aaUGCC---AGCUCU---UGCa------------CCCCGACGAG- -5'
24384 5' -56.5 NC_005264.1 + 17266 0.66 0.87393
Target:  5'- -gACGGUCGucaacggaggcgacGGGGCG-GaGGGCUGCcCa -3'
miRNA:   3'- aaUGCCAGC--------------UCUUGCaC-CCCGACGaG- -5'
24384 5' -56.5 NC_005264.1 + 95950 0.67 0.837366
Target:  5'- -gACGGUcCGGGauAugGUGucgcGGCUGCUCu -3'
miRNA:   3'- aaUGCCA-GCUC--UugCACc---CCGACGAG- -5'
24384 5' -56.5 NC_005264.1 + 76266 0.68 0.788468
Target:  5'- cUGCGGUCGccacggcagucAGAaauuccaccaucuggGCGcgggGGGGCUGCUg -3'
miRNA:   3'- aAUGCCAGC-----------UCU---------------UGCa---CCCCGACGAg -5'
24384 5' -56.5 NC_005264.1 + 149570 0.69 0.756517
Target:  5'- -cGCGGacaGccccGGGCGgaggGGGGCUGCUCg -3'
miRNA:   3'- aaUGCCag-Cu---CUUGCa---CCCCGACGAG- -5'
24384 5' -56.5 NC_005264.1 + 81647 0.69 0.74686
Target:  5'- -cGCGGUgGuGA---UGGGGCUGUUCg -3'
miRNA:   3'- aaUGCCAgCuCUugcACCCCGACGAG- -5'
24384 5' -56.5 NC_005264.1 + 111103 0.69 0.727252
Target:  5'- -gAUGGgcuacacccUCGAGAugGgcGGGuGCUGCUCg -3'
miRNA:   3'- aaUGCC---------AGCUCUugCa-CCC-CGACGAG- -5'
24384 5' -56.5 NC_005264.1 + 54420 0.69 0.707313
Target:  5'- -cGCGGcgCGccgacuAGGGCGUGGGGUUGUUUu -3'
miRNA:   3'- aaUGCCa-GC------UCUUGCACCCCGACGAG- -5'
24384 5' -56.5 NC_005264.1 + 138417 0.7 0.666738
Target:  5'- -aGCGG-CGAGAACGUGcuuugcgucGcGCUGCUCg -3'
miRNA:   3'- aaUGCCaGCUCUUGCAC---------CcCGACGAG- -5'
24384 5' -56.5 NC_005264.1 + 103808 0.7 0.666738
Target:  5'- -aGCGG-CGGGAcCGcGGGGCUugcGCUCg -3'
miRNA:   3'- aaUGCCaGCUCUuGCaCCCCGA---CGAG- -5'
24384 5' -56.5 NC_005264.1 + 13613 0.72 0.554371
Target:  5'- -cGCGGUCGGGAcGCGggcaGGGGCgGCg- -3'
miRNA:   3'- aaUGCCAGCUCU-UGCa---CCCCGaCGag -5'
24384 5' -56.5 NC_005264.1 + 132640 0.72 0.554371
Target:  5'- -cGCGGUCGGGAcGCGggcaGGGGCgGCg- -3'
miRNA:   3'- aaUGCCAGCUCU-UGCa---CCCCGaCGag -5'
24384 5' -56.5 NC_005264.1 + 70061 0.79 0.250012
Target:  5'- -gGgGGUCGGGGACcaGGGGCUGUUCg -3'
miRNA:   3'- aaUgCCAGCUCUUGcaCCCCGACGAG- -5'
24384 5' -56.5 NC_005264.1 + 111284 0.8 0.221366
Target:  5'- -aACGGUgcguaCGAGAACGaGGGGCUGCUg -3'
miRNA:   3'- aaUGCCA-----GCUCUUGCaCCCCGACGAg -5'
24384 5' -56.5 NC_005264.1 + 121310 1.06 0.003791
Target:  5'- uUUACGGUCGAGAACGUGGGGCUGCUCc -3'
miRNA:   3'- -AAUGCCAGCUCUUGCACCCCGACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.