Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24384 | 5' | -56.5 | NC_005264.1 | + | 132640 | 0.72 | 0.554371 |
Target: 5'- -cGCGGUCGGGAcGCGggcaGGGGCgGCg- -3' miRNA: 3'- aaUGCCAGCUCU-UGCa---CCCCGaCGag -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 138417 | 0.7 | 0.666738 |
Target: 5'- -aGCGG-CGAGAACGUGcuuugcgucGcGCUGCUCg -3' miRNA: 3'- aaUGCCaGCUCUUGCAC---------CcCGACGAG- -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 54420 | 0.69 | 0.707313 |
Target: 5'- -cGCGGcgCGccgacuAGGGCGUGGGGUUGUUUu -3' miRNA: 3'- aaUGCCa-GC------UCUUGCACCCCGACGAG- -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 81647 | 0.69 | 0.74686 |
Target: 5'- -cGCGGUgGuGA---UGGGGCUGUUCg -3' miRNA: 3'- aaUGCCAgCuCUugcACCCCGACGAG- -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 17266 | 0.66 | 0.87393 |
Target: 5'- -gACGGUCGucaacggaggcgacGGGGCG-GaGGGCUGCcCa -3' miRNA: 3'- aaUGCCAGC--------------UCUUGCaC-CCCGACGaG- -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 68406 | 0.66 | 0.890108 |
Target: 5'- cUGCGG--GAGGAC---GGGCUGCUCg -3' miRNA: 3'- aAUGCCagCUCUUGcacCCCGACGAG- -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 111103 | 0.69 | 0.727252 |
Target: 5'- -gAUGGgcuacacccUCGAGAugGgcGGGuGCUGCUCg -3' miRNA: 3'- aaUGCC---------AGCUCUugCa-CCC-CGACGAG- -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 103808 | 0.7 | 0.666738 |
Target: 5'- -aGCGG-CGGGAcCGcGGGGCUugcGCUCg -3' miRNA: 3'- aaUGCCaGCUCUuGCaCCCCGA---CGAG- -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 13613 | 0.72 | 0.554371 |
Target: 5'- -cGCGGUCGGGAcGCGggcaGGGGCgGCg- -3' miRNA: 3'- aaUGCCAGCUCU-UGCa---CCCCGaCGag -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 70061 | 0.79 | 0.250012 |
Target: 5'- -gGgGGUCGGGGACcaGGGGCUGUUCg -3' miRNA: 3'- aaUgCCAGCUCUUGcaCCCCGACGAG- -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 111284 | 0.8 | 0.221366 |
Target: 5'- -aACGGUgcguaCGAGAACGaGGGGCUGCUg -3' miRNA: 3'- aaUGCCA-----GCUCUUGCaCCCCGACGAg -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 149570 | 0.69 | 0.756517 |
Target: 5'- -cGCGGacaGccccGGGCGgaggGGGGCUGCUCg -3' miRNA: 3'- aaUGCCag-Cu---CUUGCa---CCCCGACGAG- -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 76266 | 0.68 | 0.788468 |
Target: 5'- cUGCGGUCGccacggcagucAGAaauuccaccaucuggGCGcgggGGGGCUGCUg -3' miRNA: 3'- aAUGCCAGC-----------UCU---------------UGCa---CCCCGACGAg -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 95950 | 0.67 | 0.837366 |
Target: 5'- -gACGGUcCGGGauAugGUGucgcGGCUGCUCu -3' miRNA: 3'- aaUGCCA-GCUC--UugCACc---CCGACGAG- -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 53290 | 0.66 | 0.880401 |
Target: 5'- -cGCGGgcuUCGGGGgcaACGggaagucugcccaGGGGCUGCUUg -3' miRNA: 3'- aaUGCC---AGCUCU---UGCa------------CCCCGACGAG- -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 47583 | 0.66 | 0.88322 |
Target: 5'- aUAUGGcucgCGGGGACGcguUGGGGgaGaCUCg -3' miRNA: 3'- aAUGCCa---GCUCUUGC---ACCCCgaC-GAG- -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 18511 | 0.66 | 0.890108 |
Target: 5'- -cGCuGUCGAGcAugGUGGGGgUcCUCa -3' miRNA: 3'- aaUGcCAGCUC-UugCACCCCgAcGAG- -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 48044 | 0.66 | 0.890108 |
Target: 5'- -aGCuGUCGAGGcauuucccCGcGGGGCUGCUg -3' miRNA: 3'- aaUGcCAGCUCUu-------GCaCCCCGACGAg -5' |
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24384 | 5' | -56.5 | NC_005264.1 | + | 121310 | 1.06 | 0.003791 |
Target: 5'- uUUACGGUCGAGAACGUGGGGCUGCUCc -3' miRNA: 3'- -AAUGCCAGCUCUUGCACCCCGACGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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