miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 3' -57.9 NC_005264.1 + 122300 0.67 0.769842
Target:  5'- ----aGCCGCAGCGCCacgucccuGGGCGaCGggGa -3'
miRNA:   3'- gcucaCGGCGUCGCGG--------CUUGC-GCuuU- -5'
24385 3' -57.9 NC_005264.1 + 155369 0.68 0.712121
Target:  5'- gGAG-GCCGCAcGaCGuucuCCGGACGCGGAGc -3'
miRNA:   3'- gCUCaCGGCGU-C-GC----GGCUUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 55608 0.68 0.741402
Target:  5'- uGGGaaaGCCGCggcuGGCGCCGAAUGCc--- -3'
miRNA:   3'- gCUCa--CGGCG----UCGCGGCUUGCGcuuu -5'
24385 3' -57.9 NC_005264.1 + 79412 0.68 0.741402
Target:  5'- gCGAG-GCCGCGGCGgaaCCcAGCGUGGGc -3'
miRNA:   3'- -GCUCaCGGCGUCGC---GGcUUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 40961 0.68 0.750987
Target:  5'- ----aGCCGCAGCgggcgacgGCgCGAGCGCGAc- -3'
miRNA:   3'- gcucaCGGCGUCG--------CG-GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 132467 0.68 0.72196
Target:  5'- cCGAGacgcgacGCgGCGGCGCCGAAggggcuccUGCGggGa -3'
miRNA:   3'- -GCUCa------CGgCGUCGCGGCUU--------GCGCuuU- -5'
24385 3' -57.9 NC_005264.1 + 158246 0.68 0.731723
Target:  5'- ----cGCCGCGGCGCUG-GCGgGGAGg -3'
miRNA:   3'- gcucaCGGCGUCGCGGCuUGCgCUUU- -5'
24385 3' -57.9 NC_005264.1 + 118040 0.68 0.741402
Target:  5'- gGAGguuUGCCGCGGCGaCCGcGGCGuCGGc- -3'
miRNA:   3'- gCUC---ACGGCGUCGC-GGC-UUGC-GCUuu -5'
24385 3' -57.9 NC_005264.1 + 159988 0.68 0.750987
Target:  5'- ----aGCCGCAGCgggcgacgGCgCGAGCGCGAc- -3'
miRNA:   3'- gcucaCGGCGUCG--------CG-GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 96225 0.68 0.731723
Target:  5'- -cGG-GCCGCgacGGCGCCGGcaACGCGGc- -3'
miRNA:   3'- gcUCaCGGCG---UCGCGGCU--UGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 39219 0.68 0.731723
Target:  5'- ----cGCCGCGGCGCUG-GCGgGGAGg -3'
miRNA:   3'- gcucaCGGCGUCGCGGCuUGCgCUUU- -5'
24385 3' -57.9 NC_005264.1 + 154612 0.68 0.712121
Target:  5'- gGAGcUGCUGCGGCuucgGCCGAugGCc--- -3'
miRNA:   3'- gCUC-ACGGCGUCG----CGGCUugCGcuuu -5'
24385 3' -57.9 NC_005264.1 + 26488 0.68 0.711133
Target:  5'- aGAGgGCCcguGCGGCGCCGAAccagcuucuacgcCGCGGc- -3'
miRNA:   3'- gCUCaCGG---CGUCGCGGCUU-------------GCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 35585 0.68 0.712121
Target:  5'- gGAGcUGCUGCGGCuucgGCCGAugGCc--- -3'
miRNA:   3'- gCUC-ACGGCGUCG----CGGCUugCGcuuu -5'
24385 3' -57.9 NC_005264.1 + 36342 0.68 0.712121
Target:  5'- gGAG-GCCGCAcGaCGuucuCCGGACGCGGAGc -3'
miRNA:   3'- gCUCaCGGCGU-C-GC----GGCUUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 40786 0.68 0.731723
Target:  5'- -----uCCGCGGCGCCGAGaGCGGAGc -3'
miRNA:   3'- gcucacGGCGUCGCGGCUUgCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 13440 0.68 0.72196
Target:  5'- cCGAGacgcgacGCgGCGGCGCCGAAggggcuccUGCGggGa -3'
miRNA:   3'- -GCUCa------CGgCGUCGCGGCUU--------GCGCuuU- -5'
24385 3' -57.9 NC_005264.1 + 162746 0.69 0.692251
Target:  5'- uCGAGcgGcCCGCGuGCGCCGAuaagUGCGAGGu -3'
miRNA:   3'- -GCUCa-C-GGCGU-CGCGGCUu---GCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 97430 0.69 0.6621
Target:  5'- uGAGcGCUGCgGGCGCCGc-CGCGGAu -3'
miRNA:   3'- gCUCaCGGCG-UCGCGGCuuGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 104167 0.69 0.641867
Target:  5'- cCGGGUGCgccUGCAGCGCCGGagaaugguAUGUGGu- -3'
miRNA:   3'- -GCUCACG---GCGUCGCGGCU--------UGCGCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.