Results 81 - 87 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 33254 | 0.72 | 0.474237 |
Target: 5'- ----cGCCGCAGCGCCugcaGAGCGCGcAAGa -3' miRNA: 3'- gcucaCGGCGUCGCGG----CUUGCGC-UUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 113491 | 0.72 | 0.52088 |
Target: 5'- cCGAucuUGCCGCGuuccuccGgGCCGAGCGCGAAc -3' miRNA: 3'- -GCUc--ACGGCGU-------CgCGGCUUGCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 76191 | 0.73 | 0.455804 |
Target: 5'- aGGGUGucccCCGCGGCGCCcAACGCaGAAGa -3' miRNA: 3'- gCUCAC----GGCGUCGCGGcUUGCG-CUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 35481 | 0.75 | 0.361991 |
Target: 5'- aGAGUGCCGCG--GCCGAuCGCGAc- -3' miRNA: 3'- gCUCACGGCGUcgCGGCUuGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 250 | 0.78 | 0.222767 |
Target: 5'- --uGUGCgGCGGCGCUGGACGCGGc- -3' miRNA: 3'- gcuCACGgCGUCGCGGCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 75683 | 0.79 | 0.202061 |
Target: 5'- gGAGUcGCgCGCAGCGCCGucuuucGGCGCGAAGa -3' miRNA: 3'- gCUCA-CG-GCGUCGCGGC------UUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 120406 | 1.06 | 0.003153 |
Target: 5'- gCGAGUGCCGCAGCGCCGAACGCGAAAu -3' miRNA: 3'- -GCUCACGGCGUCGCGGCUUGCGCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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