miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 3' -57.9 NC_005264.1 + 39219 0.68 0.731723
Target:  5'- ----cGCCGCGGCGCUG-GCGgGGAGg -3'
miRNA:   3'- gcucaCGGCGUCGCGGCuUGCgCUUU- -5'
24385 3' -57.9 NC_005264.1 + 118040 0.68 0.741402
Target:  5'- gGAGguuUGCCGCGGCGaCCGcGGCGuCGGc- -3'
miRNA:   3'- gCUC---ACGGCGUCGC-GGC-UUGC-GCUuu -5'
24385 3' -57.9 NC_005264.1 + 79412 0.68 0.741402
Target:  5'- gCGAG-GCCGCGGCGgaaCCcAGCGUGGGc -3'
miRNA:   3'- -GCUCaCGGCGUCGC---GGcUUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 55608 0.68 0.741402
Target:  5'- uGGGaaaGCCGCggcuGGCGCCGAAUGCc--- -3'
miRNA:   3'- gCUCa--CGGCG----UCGCGGCUUGCGcuuu -5'
24385 3' -57.9 NC_005264.1 + 159988 0.68 0.750987
Target:  5'- ----aGCCGCAGCgggcgacgGCgCGAGCGCGAc- -3'
miRNA:   3'- gcucaCGGCGUCG--------CG-GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 40961 0.68 0.750987
Target:  5'- ----aGCCGCAGCgggcgacgGCgCGAGCGCGAc- -3'
miRNA:   3'- gcucaCGGCGUCG--------CG-GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 132768 0.67 0.769842
Target:  5'- cCGGGcGCgGCGGCGCCGA-CGaGggGc -3'
miRNA:   3'- -GCUCaCGgCGUCGCGGCUuGCgCuuU- -5'
24385 3' -57.9 NC_005264.1 + 3273 0.67 0.769842
Target:  5'- ----aGCCGCAGCGCCacgucccuGGGCGaCGggGa -3'
miRNA:   3'- gcucaCGGCGUCGCGG--------CUUGC-GCuuU- -5'
24385 3' -57.9 NC_005264.1 + 122300 0.67 0.769842
Target:  5'- ----aGCCGCAGCGCCacgucccuGGGCGaCGggGa -3'
miRNA:   3'- gcucaCGGCGUCGCGG--------CUUGC-GCuuU- -5'
24385 3' -57.9 NC_005264.1 + 76074 0.67 0.769842
Target:  5'- gCGAc-GCCGCgAGCGUCGAcggcucuacggGCGCGAAc -3'
miRNA:   3'- -GCUcaCGGCG-UCGCGGCU-----------UGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 153881 0.67 0.779093
Target:  5'- -uGGUGCUGCAGCGaguuggccggcCCGAAgGcCGAGAa -3'
miRNA:   3'- gcUCACGGCGUCGC-----------GGCUUgC-GCUUU- -5'
24385 3' -57.9 NC_005264.1 + 113044 0.67 0.779093
Target:  5'- gCGAcuggGCCGCGGCGaUCuuACGCGAGAc -3'
miRNA:   3'- -GCUca--CGGCGUCGC-GGcuUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 57367 0.67 0.782758
Target:  5'- uGGGUGCCGUguuaaccuucgguggGGCgcaGCCGAuuCGCGAu- -3'
miRNA:   3'- gCUCACGGCG---------------UCG---CGGCUu-GCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 16432 0.67 0.787309
Target:  5'- uCGAcUGCCGCGGgGCCugcccgcggguguGAACGUGGu- -3'
miRNA:   3'- -GCUcACGGCGUCgCGG-------------CUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 129552 0.67 0.788215
Target:  5'- gCGGGU-CCuguGCGGCGCCGcccucaggGGCGCGGAu -3'
miRNA:   3'- -GCUCAcGG---CGUCGCGGC--------UUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 10525 0.67 0.788215
Target:  5'- gCGGGU-CCuguGCGGCGCCGcccucaggGGCGCGGAu -3'
miRNA:   3'- -GCUCAcGG---CGUCGCGGC--------UUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 87755 0.67 0.797199
Target:  5'- gCGccUGCCGCAGCGCC----GCGAAGa -3'
miRNA:   3'- -GCucACGGCGUCGCGGcuugCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 135566 0.67 0.797199
Target:  5'- uCGAGaaGCCGC-GCGUCGcuCGCGAc- -3'
miRNA:   3'- -GCUCa-CGGCGuCGCGGCuuGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 67252 0.67 0.797199
Target:  5'- gGGGUaGCCGCuaaagcGCGCUGugguauagacGACGCGAAu -3'
miRNA:   3'- gCUCA-CGGCGu-----CGCGGC----------UUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 110125 0.67 0.806037
Target:  5'- cCGAGaGCCGCcGCGCuuuugggggCGGGCgGCGAAAc -3'
miRNA:   3'- -GCUCaCGGCGuCGCG---------GCUUG-CGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.