Results 81 - 87 of 87 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24385 | 3' | -57.9 | NC_005264.1 | + | 38589 | 0.66 | 0.838957 |
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Target: 5'- cCGAG-GCCGCGgaagaagagcuucGCcucGCCGcGGCGCGAGAc -3' miRNA: 3'- -GCUCaCGGCGU-------------CG---CGGC-UUGCGCUUU- -5' |
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| 24385 | 3' | -57.9 | NC_005264.1 | + | 157616 | 0.66 | 0.838957 |
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Target: 5'- cCGAG-GCCGCGgaagaagagcuucGCcucGCCGcGGCGCGAGAc -3' miRNA: 3'- -GCUCaCGGCGU-------------CG---CGGC-UUGCGCUUU- -5' |
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| 24385 | 3' | -57.9 | NC_005264.1 | + | 15452 | 0.66 | 0.839766 |
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Target: 5'- uGAGUGUgGacaAGCGCgacGACGCGAAAg -3' miRNA: 3'- gCUCACGgCg--UCGCGgc-UUGCGCUUU- -5' |
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| 24385 | 3' | -57.9 | NC_005264.1 | + | 135113 | 0.66 | 0.839766 |
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Target: 5'- uGGGUGCCGUgccguuCGCCGAAuuaugcccCGCGAc- -3' miRNA: 3'- gCUCACGGCGuc----GCGGCUU--------GCGCUuu -5' |
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| 24385 | 3' | -57.9 | NC_005264.1 | + | 72015 | 0.66 | 0.847754 |
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Target: 5'- uCGAcGUG-CGCGGcCGCCacACGCGAGAc -3' miRNA: 3'- -GCU-CACgGCGUC-GCGGcuUGCGCUUU- -5' |
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| 24385 | 3' | -57.9 | NC_005264.1 | + | 129312 | 0.66 | 0.847754 |
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Target: 5'- ----cGCgGCAGCGCCGAcccuAUGgGAAAg -3' miRNA: 3'- gcucaCGgCGUCGCGGCU----UGCgCUUU- -5' |
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| 24385 | 3' | -57.9 | NC_005264.1 | + | 20255 | 0.66 | 0.847754 |
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Target: 5'- aGGG-GuuGCGGCGCgGccuCGCGGAGg -3' miRNA: 3'- gCUCaCggCGUCGCGgCuu-GCGCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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