miRNA display CGI


Results 41 - 60 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 3' -57.9 NC_005264.1 + 67252 0.67 0.797199
Target:  5'- gGGGUaGCCGCuaaagcGCGCUGugguauagacGACGCGAAu -3'
miRNA:   3'- gCUCA-CGGCGu-----CGCGGC----------UUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 72015 0.66 0.847754
Target:  5'- uCGAcGUG-CGCGGcCGCCacACGCGAGAc -3'
miRNA:   3'- -GCU-CACgGCGUC-GCGGcuUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 75683 0.79 0.202061
Target:  5'- gGAGUcGCgCGCAGCGCCGucuuucGGCGCGAAGa -3'
miRNA:   3'- gCUCA-CG-GCGUCGCGGC------UUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 76074 0.67 0.769842
Target:  5'- gCGAc-GCCGCgAGCGUCGAcggcucuacggGCGCGAAc -3'
miRNA:   3'- -GCUcaCGGCG-UCGCGGCU-----------UGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 76191 0.73 0.455804
Target:  5'- aGGGUGucccCCGCGGCGCCcAACGCaGAAGa -3'
miRNA:   3'- gCUCAC----GGCGUCGCGGcUUGCG-CUUU- -5'
24385 3' -57.9 NC_005264.1 + 79412 0.68 0.741402
Target:  5'- gCGAG-GCCGCGGCGgaaCCcAGCGUGGGc -3'
miRNA:   3'- -GCUCaCGGCGUCGC---GGcUUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 82921 0.69 0.6621
Target:  5'- gGAGUccGCCGCAGaCGUCGGccACGCGc-- -3'
miRNA:   3'- gCUCA--CGGCGUC-GCGGCU--UGCGCuuu -5'
24385 3' -57.9 NC_005264.1 + 87755 0.67 0.797199
Target:  5'- gCGccUGCCGCAGCGCC----GCGAAGa -3'
miRNA:   3'- -GCucACGGCGUCGCGGcuugCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 91888 0.66 0.823242
Target:  5'- gCGGGgugguugGCCGCGGCaGCgaugggCGGGCGCGGc- -3'
miRNA:   3'- -GCUCa------CGGCGUCG-CG------GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 94408 0.66 0.831593
Target:  5'- ----aGaCCGCGGCGCgGAcuGCGCGAu- -3'
miRNA:   3'- gcucaC-GGCGUCGCGgCU--UGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 94411 0.69 0.6621
Target:  5'- -cAG-GCCGCGGCGCCGGuaguccagaGCGAGc -3'
miRNA:   3'- gcUCaCGGCGUCGCGGCUug-------CGCUUu -5'
24385 3' -57.9 NC_005264.1 + 95324 0.66 0.831593
Target:  5'- gGAGauUGCCGC--CGCCGGGCgccGCGAAAc -3'
miRNA:   3'- gCUC--ACGGCGucGCGGCUUG---CGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 95919 0.69 0.692251
Target:  5'- -aAGUGgUGCAGCGCCGGAgaCGAGAa -3'
miRNA:   3'- gcUCACgGCGUCGCGGCUUgcGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 96225 0.68 0.731723
Target:  5'- -cGG-GCCGCgacGGCGCCGGcaACGCGGc- -3'
miRNA:   3'- gcUCaCGGCG---UCGCGGCU--UGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 97430 0.69 0.6621
Target:  5'- uGAGcGCUGCgGGCGCCGc-CGCGGAu -3'
miRNA:   3'- gCUCaCGGCG-UCGCGGCuuGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 104167 0.69 0.641867
Target:  5'- cCGGGUGCgccUGCAGCGCCGGagaaugguAUGUGGu- -3'
miRNA:   3'- -GCUCACG---GCGUCGCGGCU--------UGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 109692 0.66 0.823242
Target:  5'- aCGAGcaguaccGCCGUAGCGCUacugaaGugGCGAGAa -3'
miRNA:   3'- -GCUCa------CGGCGUCGCGGc-----UugCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 110125 0.67 0.806037
Target:  5'- cCGAGaGCCGCcGCGCuuuugggggCGGGCgGCGAAAc -3'
miRNA:   3'- -GCUCaCGGCGuCGCG---------GCUUG-CGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 113044 0.67 0.779093
Target:  5'- gCGAcuggGCCGCGGCGaUCuuACGCGAGAc -3'
miRNA:   3'- -GCUca--CGGCGUCGC-GGcuUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 113491 0.72 0.52088
Target:  5'- cCGAucuUGCCGCGuuccuccGgGCCGAGCGCGAAc -3'
miRNA:   3'- -GCUc--ACGGCGU-------CgCGGCUUGCGCUUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.