miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 3' -57.9 NC_005264.1 + 117424 0.66 0.831593
Target:  5'- gGGGcUGUCGCGGCGCgcaGGGCGCc--- -3'
miRNA:   3'- gCUC-ACGGCGUCGCGg--CUUGCGcuuu -5'
24385 3' -57.9 NC_005264.1 + 118040 0.68 0.741402
Target:  5'- gGAGguuUGCCGCGGCGaCCGcGGCGuCGGc- -3'
miRNA:   3'- gCUC---ACGGCGUCGC-GGC-UUGC-GCUuu -5'
24385 3' -57.9 NC_005264.1 + 120406 1.06 0.003153
Target:  5'- gCGAGUGCCGCAGCGCCGAACGCGAAAu -3'
miRNA:   3'- -GCUCACGGCGUCGCGGCUUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 121115 0.66 0.814721
Target:  5'- ----cGCCGCuGcCGCCuGGCGCGAGAa -3'
miRNA:   3'- gcucaCGGCGuC-GCGGcUUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 121952 0.67 0.806037
Target:  5'- gGAGUcGCCG-AGCGagaCGGACGgGAAGa -3'
miRNA:   3'- gCUCA-CGGCgUCGCg--GCUUGCgCUUU- -5'
24385 3' -57.9 NC_005264.1 + 122300 0.67 0.769842
Target:  5'- ----aGCCGCAGCGCCacgucccuGGGCGaCGggGa -3'
miRNA:   3'- gcucaCGGCGUCGCGG--------CUUGC-GCuuU- -5'
24385 3' -57.9 NC_005264.1 + 127384 0.7 0.631735
Target:  5'- gCGAccGUCGCugaugcuuaccGGCGCCGGACGCGGc- -3'
miRNA:   3'- -GCUcaCGGCG-----------UCGCGGCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 129312 0.66 0.847754
Target:  5'- ----cGCgGCAGCGCCGAcccuAUGgGAAAg -3'
miRNA:   3'- gcucaCGgCGUCGCGGCU----UGCgCUUU- -5'
24385 3' -57.9 NC_005264.1 + 129507 0.71 0.54142
Target:  5'- aGGGUuUgGCGGCGCCGGAgGCGAc- -3'
miRNA:   3'- gCUCAcGgCGUCGCGGCUUgCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 129552 0.67 0.788215
Target:  5'- gCGGGU-CCuguGCGGCGCCGcccucaggGGCGCGGAu -3'
miRNA:   3'- -GCUCAcGG---CGUCGCGGC--------UUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 132467 0.68 0.72196
Target:  5'- cCGAGacgcgacGCgGCGGCGCCGAAggggcuccUGCGggGa -3'
miRNA:   3'- -GCUCa------CGgCGUCGCGGCUU--------GCGCuuU- -5'
24385 3' -57.9 NC_005264.1 + 132768 0.67 0.769842
Target:  5'- cCGGGcGCgGCGGCGCCGA-CGaGggGc -3'
miRNA:   3'- -GCUCaCGgCGUCGCGGCUuGCgCuuU- -5'
24385 3' -57.9 NC_005264.1 + 135113 0.66 0.839766
Target:  5'- uGGGUGCCGUgccguuCGCCGAAuuaugcccCGCGAc- -3'
miRNA:   3'- gCUCACGGCGuc----GCGGCUU--------GCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 135566 0.67 0.797199
Target:  5'- uCGAGaaGCCGC-GCGUCGcuCGCGAc- -3'
miRNA:   3'- -GCUCa-CGGCGuCGCGGCuuGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 138337 0.7 0.631735
Target:  5'- gCGcGUGCgCGacaaGGCGcCCGAACGCGAc- -3'
miRNA:   3'- -GCuCACG-GCg---UCGC-GGCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 142678 0.7 0.62059
Target:  5'- aCGucGUGCCGCgaucuugGGCGCCGGcgGCGCGc-- -3'
miRNA:   3'- -GCu-CACGGCG-------UCGCGGCU--UGCGCuuu -5'
24385 3' -57.9 NC_005264.1 + 150865 0.66 0.831593
Target:  5'- --cGUGCCGC-GCGCggcaagacaUGGGCGCGAc- -3'
miRNA:   3'- gcuCACGGCGuCGCG---------GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 152278 0.7 0.61148
Target:  5'- aCGAG-GaaGCAGCGgCGAACGCGcGAu -3'
miRNA:   3'- -GCUCaCggCGUCGCgGCUUGCGCuUU- -5'
24385 3' -57.9 NC_005264.1 + 153881 0.67 0.779093
Target:  5'- -uGGUGCUGCAGCGaguuggccggcCCGAAgGcCGAGAa -3'
miRNA:   3'- gcUCACGGCGUCGC-----------GGCUUgC-GCUUU- -5'
24385 3' -57.9 NC_005264.1 + 154612 0.68 0.712121
Target:  5'- gGAGcUGCUGCGGCuucgGCCGAugGCc--- -3'
miRNA:   3'- gCUC-ACGGCGUCG----CGGCUugCGcuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.