Results 81 - 87 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 154813 | 0.66 | 0.823242 |
Target: 5'- aGGGcGCgGUGGCGCCGucGugGCGGGc -3' miRNA: 3'- gCUCaCGgCGUCGCGGC--UugCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 155369 | 0.68 | 0.712121 |
Target: 5'- gGAG-GCCGCAcGaCGuucuCCGGACGCGGAGc -3' miRNA: 3'- gCUCaCGGCGU-C-GC----GGCUUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 157616 | 0.66 | 0.838957 |
Target: 5'- cCGAG-GCCGCGgaagaagagcuucGCcucGCCGcGGCGCGAGAc -3' miRNA: 3'- -GCUCaCGGCGU-------------CG---CGGC-UUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 158246 | 0.68 | 0.731723 |
Target: 5'- ----cGCCGCGGCGCUG-GCGgGGAGg -3' miRNA: 3'- gcucaCGGCGUCGCGGCuUGCgCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 158850 | 0.66 | 0.831593 |
Target: 5'- aGAGaacccGCCGC--CGCCGAAUGCGGc- -3' miRNA: 3'- gCUCa----CGGCGucGCGGCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 159988 | 0.68 | 0.750987 |
Target: 5'- ----aGCCGCAGCgggcgacgGCgCGAGCGCGAc- -3' miRNA: 3'- gcucaCGGCGUCG--------CG-GCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 162746 | 0.69 | 0.692251 |
Target: 5'- uCGAGcgGcCCGCGuGCGCCGAuaagUGCGAGGu -3' miRNA: 3'- -GCUCa-C-GGCGU-CGCGGCUu---GCGCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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