Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 127384 | 0.7 | 0.631735 |
Target: 5'- gCGAccGUCGCugaugcuuaccGGCGCCGGACGCGGc- -3' miRNA: 3'- -GCUcaCGGCG-----------UCGCGGCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 122300 | 0.67 | 0.769842 |
Target: 5'- ----aGCCGCAGCGCCacgucccuGGGCGaCGggGa -3' miRNA: 3'- gcucaCGGCGUCGCGG--------CUUGC-GCuuU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 121952 | 0.67 | 0.806037 |
Target: 5'- gGAGUcGCCG-AGCGagaCGGACGgGAAGa -3' miRNA: 3'- gCUCA-CGGCgUCGCg--GCUUGCgCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 121115 | 0.66 | 0.814721 |
Target: 5'- ----cGCCGCuGcCGCCuGGCGCGAGAa -3' miRNA: 3'- gcucaCGGCGuC-GCGGcUUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 120406 | 1.06 | 0.003153 |
Target: 5'- gCGAGUGCCGCAGCGCCGAACGCGAAAu -3' miRNA: 3'- -GCUCACGGCGUCGCGGCUUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 118040 | 0.68 | 0.741402 |
Target: 5'- gGAGguuUGCCGCGGCGaCCGcGGCGuCGGc- -3' miRNA: 3'- gCUC---ACGGCGUCGC-GGC-UUGC-GCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 117424 | 0.66 | 0.831593 |
Target: 5'- gGGGcUGUCGCGGCGCgcaGGGCGCc--- -3' miRNA: 3'- gCUC-ACGGCGUCGCGg--CUUGCGcuuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 113491 | 0.72 | 0.52088 |
Target: 5'- cCGAucuUGCCGCGuuccuccGgGCCGAGCGCGAAc -3' miRNA: 3'- -GCUc--ACGGCGU-------CgCGGCUUGCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 113044 | 0.67 | 0.779093 |
Target: 5'- gCGAcuggGCCGCGGCGaUCuuACGCGAGAc -3' miRNA: 3'- -GCUca--CGGCGUCGC-GGcuUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 110125 | 0.67 | 0.806037 |
Target: 5'- cCGAGaGCCGCcGCGCuuuugggggCGGGCgGCGAAAc -3' miRNA: 3'- -GCUCaCGGCGuCGCG---------GCUUG-CGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 109692 | 0.66 | 0.823242 |
Target: 5'- aCGAGcaguaccGCCGUAGCGCUacugaaGugGCGAGAa -3' miRNA: 3'- -GCUCa------CGGCGUCGCGGc-----UugCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 104167 | 0.69 | 0.641867 |
Target: 5'- cCGGGUGCgccUGCAGCGCCGGagaaugguAUGUGGu- -3' miRNA: 3'- -GCUCACG---GCGUCGCGGCU--------UGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 97430 | 0.69 | 0.6621 |
Target: 5'- uGAGcGCUGCgGGCGCCGc-CGCGGAu -3' miRNA: 3'- gCUCaCGGCG-UCGCGGCuuGCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 96225 | 0.68 | 0.731723 |
Target: 5'- -cGG-GCCGCgacGGCGCCGGcaACGCGGc- -3' miRNA: 3'- gcUCaCGGCG---UCGCGGCU--UGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 95919 | 0.69 | 0.692251 |
Target: 5'- -aAGUGgUGCAGCGCCGGAgaCGAGAa -3' miRNA: 3'- gcUCACgGCGUCGCGGCUUgcGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 95324 | 0.66 | 0.831593 |
Target: 5'- gGAGauUGCCGC--CGCCGGGCgccGCGAAAc -3' miRNA: 3'- gCUC--ACGGCGucGCGGCUUG---CGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 94411 | 0.69 | 0.6621 |
Target: 5'- -cAG-GCCGCGGCGCCGGuaguccagaGCGAGc -3' miRNA: 3'- gcUCaCGGCGUCGCGGCUug-------CGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 94408 | 0.66 | 0.831593 |
Target: 5'- ----aGaCCGCGGCGCgGAcuGCGCGAu- -3' miRNA: 3'- gcucaC-GGCGUCGCGgCU--UGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 91888 | 0.66 | 0.823242 |
Target: 5'- gCGGGgugguugGCCGCGGCaGCgaugggCGGGCGCGGc- -3' miRNA: 3'- -GCUCa------CGGCGUCG-CG------GCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 87755 | 0.67 | 0.797199 |
Target: 5'- gCGccUGCCGCAGCGCC----GCGAAGa -3' miRNA: 3'- -GCucACGGCGUCGCGGcuugCGCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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