miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 3' -57.9 NC_005264.1 + 82921 0.69 0.6621
Target:  5'- gGAGUccGCCGCAGaCGUCGGccACGCGc-- -3'
miRNA:   3'- gCUCA--CGGCGUC-GCGGCU--UGCGCuuu -5'
24385 3' -57.9 NC_005264.1 + 79412 0.68 0.741402
Target:  5'- gCGAG-GCCGCGGCGgaaCCcAGCGUGGGc -3'
miRNA:   3'- -GCUCaCGGCGUCGC---GGcUUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 76191 0.73 0.455804
Target:  5'- aGGGUGucccCCGCGGCGCCcAACGCaGAAGa -3'
miRNA:   3'- gCUCAC----GGCGUCGCGGcUUGCG-CUUU- -5'
24385 3' -57.9 NC_005264.1 + 76074 0.67 0.769842
Target:  5'- gCGAc-GCCGCgAGCGUCGAcggcucuacggGCGCGAAc -3'
miRNA:   3'- -GCUcaCGGCG-UCGCGGCU-----------UGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 75683 0.79 0.202061
Target:  5'- gGAGUcGCgCGCAGCGCCGucuuucGGCGCGAAGa -3'
miRNA:   3'- gCUCA-CG-GCGUCGCGGC------UUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 72015 0.66 0.847754
Target:  5'- uCGAcGUG-CGCGGcCGCCacACGCGAGAc -3'
miRNA:   3'- -GCU-CACgGCGUC-GCGGcuUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 67252 0.67 0.797199
Target:  5'- gGGGUaGCCGCuaaagcGCGCUGugguauagacGACGCGAAu -3'
miRNA:   3'- gCUCA-CGGCGu-----CGCGGC----------UUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 64624 0.7 0.61148
Target:  5'- -cGGUGCUguccaGCAGCGCCGGAuucUGCGAu- -3'
miRNA:   3'- gcUCACGG-----CGUCGCGGCUU---GCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 60598 0.69 0.672185
Target:  5'- uCGAGccccuucucguaUGCCGCGGCaGCCGGcucGCGCaGGAGc -3'
miRNA:   3'- -GCUC------------ACGGCGUCG-CGGCU---UGCG-CUUU- -5'
24385 3' -57.9 NC_005264.1 + 59908 0.66 0.814721
Target:  5'- -cAGUGCCcuGUGGCGCaGAACGUGAc- -3'
miRNA:   3'- gcUCACGG--CGUCGCGgCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 58879 0.69 0.672185
Target:  5'- aGGGUG-CGCAGCGCC--ACGCGu-- -3'
miRNA:   3'- gCUCACgGCGUCGCGGcuUGCGCuuu -5'
24385 3' -57.9 NC_005264.1 + 57367 0.67 0.782758
Target:  5'- uGGGUGCCGUguuaaccuucgguggGGCgcaGCCGAuuCGCGAu- -3'
miRNA:   3'- gCUCACGGCG---------------UCG---CGGCUu-GCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 55608 0.68 0.741402
Target:  5'- uGGGaaaGCCGCggcuGGCGCCGAAUGCc--- -3'
miRNA:   3'- gCUCa--CGGCG----UCGCGGCUUGCGcuuu -5'
24385 3' -57.9 NC_005264.1 + 52201 0.69 0.672185
Target:  5'- uGAGgGCCGUggGGCGCgGuGGCGCGAGc -3'
miRNA:   3'- gCUCaCGGCG--UCGCGgC-UUGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 51950 0.7 0.631735
Target:  5'- aGGGUGCCGCuaacGCGUCGugucGGCGCGc-- -3'
miRNA:   3'- gCUCACGGCGu---CGCGGC----UUGCGCuuu -5'
24385 3' -57.9 NC_005264.1 + 43856 0.66 0.814721
Target:  5'- gGGGcUGCCGCGGgGaagagacggaaCGAGCGCGGc- -3'
miRNA:   3'- gCUC-ACGGCGUCgCg----------GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 43720 0.69 0.692251
Target:  5'- uCGAGcgGcCCGCGuGCGCCGAuaagUGCGAGGu -3'
miRNA:   3'- -GCUCa-C-GGCGU-CGCGGCUu---GCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 40961 0.68 0.750987
Target:  5'- ----aGCCGCAGCgggcgacgGCgCGAGCGCGAc- -3'
miRNA:   3'- gcucaCGGCGUCG--------CG-GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 40786 0.68 0.731723
Target:  5'- -----uCCGCGGCGCCGAGaGCGGAGc -3'
miRNA:   3'- gcucacGGCGUCGCGGCUUgCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 39219 0.68 0.731723
Target:  5'- ----cGCCGCGGCGCUG-GCGgGGAGg -3'
miRNA:   3'- gcucaCGGCGUCGCGGCuUGCgCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.