Results 81 - 87 of 87 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24385 | 3' | -57.9 | NC_005264.1 | + | 11093 | 0.66 | 0.814721 |
|
Target: 5'- aCGA-UGCUGCGGCGUCGAGaGaCGAAu -3' miRNA: 3'- -GCUcACGGCGUCGCGGCUUgC-GCUUu -5' |
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| 24385 | 3' | -57.9 | NC_005264.1 | + | 10525 | 0.67 | 0.788215 |
|
Target: 5'- gCGGGU-CCuguGCGGCGCCGcccucaggGGCGCGGAu -3' miRNA: 3'- -GCUCAcGG---CGUCGCGGC--------UUGCGCUUu -5' |
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| 24385 | 3' | -57.9 | NC_005264.1 | + | 8357 | 0.7 | 0.631735 |
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Target: 5'- gCGAccGUCGCugaugcuuaccGGCGCCGGACGCGGc- -3' miRNA: 3'- -GCUcaCGGCG-----------UCGCGGCUUGCGCUuu -5' |
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| 24385 | 3' | -57.9 | NC_005264.1 | + | 5526 | 0.72 | 0.493036 |
|
Target: 5'- uGAcaGCCGCGGCGUCucGCGCGGAGc -3' miRNA: 3'- gCUcaCGGCGUCGCGGcuUGCGCUUU- -5' |
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| 24385 | 3' | -57.9 | NC_005264.1 | + | 3273 | 0.67 | 0.769842 |
|
Target: 5'- ----aGCCGCAGCGCCacgucccuGGGCGaCGggGa -3' miRNA: 3'- gcucaCGGCGUCGCGG--------CUUGC-GCuuU- -5' |
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| 24385 | 3' | -57.9 | NC_005264.1 | + | 2926 | 0.67 | 0.806037 |
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Target: 5'- gGAGUcGCCG-AGCGagaCGGACGgGAAGa -3' miRNA: 3'- gCUCA-CGGCgUCGCg--GCUUGCgCUUU- -5' |
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| 24385 | 3' | -57.9 | NC_005264.1 | + | 250 | 0.78 | 0.222767 |
|
Target: 5'- --uGUGCgGCGGCGCUGGACGCGGc- -3' miRNA: 3'- gcuCACGgCGUCGCGGCUUGCGCUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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