Results 41 - 60 of 87 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 26488 | 0.68 | 0.711133 |
Target: 5'- aGAGgGCCcguGCGGCGCCGAAccagcuucuacgcCGCGGc- -3' miRNA: 3'- gCUCaCGG---CGUCGCGGCUU-------------GCGCUuu -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 162746 | 0.69 | 0.692251 |
Target: 5'- uCGAGcgGcCCGCGuGCGCCGAuaagUGCGAGGu -3' miRNA: 3'- -GCUCa-C-GGCGU-CGCGGCUu---GCGCUUU- -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 95919 | 0.69 | 0.692251 |
Target: 5'- -aAGUGgUGCAGCGCCGGAgaCGAGAa -3' miRNA: 3'- gcUCACgGCGUCGCGGCUUgcGCUUU- -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 60598 | 0.69 | 0.672185 |
Target: 5'- uCGAGccccuucucguaUGCCGCGGCaGCCGGcucGCGCaGGAGc -3' miRNA: 3'- -GCUC------------ACGGCGUCG-CGGCU---UGCG-CUUU- -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 52201 | 0.69 | 0.672185 |
Target: 5'- uGAGgGCCGUggGGCGCgGuGGCGCGAGc -3' miRNA: 3'- gCUCaCGGCG--UCGCGgC-UUGCGCUUu -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 24840 | 0.69 | 0.672185 |
Target: 5'- gGAGUGCCGCuGCuuCCGcACgGCGAAGu -3' miRNA: 3'- gCUCACGGCGuCGc-GGCuUG-CGCUUU- -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 97430 | 0.69 | 0.6621 |
Target: 5'- uGAGcGCUGCgGGCGCCGc-CGCGGAu -3' miRNA: 3'- gCUCaCGGCG-UCGCGGCuuGCGCUUu -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 104167 | 0.69 | 0.641867 |
Target: 5'- cCGGGUGCgccUGCAGCGCCGGagaaugguAUGUGGu- -3' miRNA: 3'- -GCUCACG---GCGUCGCGGCU--------UGCGCUuu -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 35787 | 0.66 | 0.823242 |
Target: 5'- aGGGcGCgGUGGCGCCGucGugGCGGGc -3' miRNA: 3'- gCUCaCGgCGUCGCGGC--UugCGCUUu -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 121115 | 0.66 | 0.814721 |
Target: 5'- ----cGCCGCuGcCGCCuGGCGCGAGAa -3' miRNA: 3'- gcucaCGGCGuC-GCGGcUUGCGCUUU- -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 12963 | 0.66 | 0.814721 |
Target: 5'- cCGGGcgGCgCGCGcCGCCGAcgacgACGCGAGc -3' miRNA: 3'- -GCUCa-CG-GCGUcGCGGCU-----UGCGCUUu -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 43856 | 0.66 | 0.814721 |
Target: 5'- gGGGcUGCCGCGGgGaagagacggaaCGAGCGCGGc- -3' miRNA: 3'- gCUC-ACGGCGUCgCg----------GCUUGCGCUuu -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 110125 | 0.67 | 0.806037 |
Target: 5'- cCGAGaGCCGCcGCGCuuuugggggCGGGCgGCGAAAc -3' miRNA: 3'- -GCUCaCGGCGuCGCG---------GCUUG-CGCUUU- -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 109692 | 0.66 | 0.823242 |
Target: 5'- aCGAGcaguaccGCCGUAGCGCUacugaaGugGCGAGAa -3' miRNA: 3'- -GCUCa------CGGCGUCGCGGc-----UugCGCUUU- -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 31839 | 0.66 | 0.831593 |
Target: 5'- --cGUGCCGC-GCGCggcaagacaUGGGCGCGAc- -3' miRNA: 3'- gcuCACGGCGuCGCG---------GCUUGCGCUuu -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 95324 | 0.66 | 0.831593 |
Target: 5'- gGAGauUGCCGC--CGCCGGGCgccGCGAAAc -3' miRNA: 3'- gCUC--ACGGCGucGCGGCUUG---CGCUUU- -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 158850 | 0.66 | 0.831593 |
Target: 5'- aGAGaacccGCCGC--CGCCGAAUGCGGc- -3' miRNA: 3'- gCUCa----CGGCGucGCGGCUUGCGCUuu -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 38589 | 0.66 | 0.838957 |
Target: 5'- cCGAG-GCCGCGgaagaagagcuucGCcucGCCGcGGCGCGAGAc -3' miRNA: 3'- -GCUCaCGGCGU-------------CG---CGGC-UUGCGCUUU- -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 135113 | 0.66 | 0.839766 |
Target: 5'- uGGGUGCCGUgccguuCGCCGAAuuaugcccCGCGAc- -3' miRNA: 3'- gCUCACGGCGuc----GCGGCUU--------GCGCUuu -5' |
|||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 120406 | 1.06 | 0.003153 |
Target: 5'- gCGAGUGCCGCAGCGCCGAACGCGAAAu -3' miRNA: 3'- -GCUCACGGCGUCGCGGCUUGCGCUUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home