Results 61 - 80 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 58879 | 0.69 | 0.672185 |
Target: 5'- aGGGUG-CGCAGCGCC--ACGCGu-- -3' miRNA: 3'- gCUCACgGCGUCGCGGcuUGCGCuuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 94411 | 0.69 | 0.6621 |
Target: 5'- -cAG-GCCGCGGCGCCGGuaguccagaGCGAGc -3' miRNA: 3'- gcUCaCGGCGUCGCGGCUug-------CGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 82921 | 0.69 | 0.6621 |
Target: 5'- gGAGUccGCCGCAGaCGUCGGccACGCGc-- -3' miRNA: 3'- gCUCA--CGGCGUC-GCGGCU--UGCGCuuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 153881 | 0.67 | 0.779093 |
Target: 5'- -uGGUGCUGCAGCGaguuggccggcCCGAAgGcCGAGAa -3' miRNA: 3'- gcUCACGGCGUCGC-----------GGCUUgC-GCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 57367 | 0.67 | 0.782758 |
Target: 5'- uGGGUGCCGUguuaaccuucgguggGGCgcaGCCGAuuCGCGAu- -3' miRNA: 3'- gCUCACGGCG---------------UCG---CGGCUu-GCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 10525 | 0.67 | 0.788215 |
Target: 5'- gCGGGU-CCuguGCGGCGCCGcccucaggGGCGCGGAu -3' miRNA: 3'- -GCUCAcGG---CGUCGCGGC--------UUGCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 135113 | 0.66 | 0.839766 |
Target: 5'- uGGGUGCCGUgccguuCGCCGAAuuaugcccCGCGAc- -3' miRNA: 3'- gCUCACGGCGuc----GCGGCUU--------GCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 38589 | 0.66 | 0.838957 |
Target: 5'- cCGAG-GCCGCGgaagaagagcuucGCcucGCCGcGGCGCGAGAc -3' miRNA: 3'- -GCUCaCGGCGU-------------CG---CGGC-UUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 158850 | 0.66 | 0.831593 |
Target: 5'- aGAGaacccGCCGC--CGCCGAAUGCGGc- -3' miRNA: 3'- gCUCa----CGGCGucGCGGCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 95324 | 0.66 | 0.831593 |
Target: 5'- gGAGauUGCCGC--CGCCGGGCgccGCGAAAc -3' miRNA: 3'- gCUC--ACGGCGucGCGGCUUG---CGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 31839 | 0.66 | 0.831593 |
Target: 5'- --cGUGCCGC-GCGCggcaagacaUGGGCGCGAc- -3' miRNA: 3'- gcuCACGGCGuCGCG---------GCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 109692 | 0.66 | 0.823242 |
Target: 5'- aCGAGcaguaccGCCGUAGCGCUacugaaGugGCGAGAa -3' miRNA: 3'- -GCUCa------CGGCGUCGCGGc-----UugCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 35787 | 0.66 | 0.823242 |
Target: 5'- aGGGcGCgGUGGCGCCGucGugGCGGGc -3' miRNA: 3'- gCUCaCGgCGUCGCGGC--UugCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 121115 | 0.66 | 0.814721 |
Target: 5'- ----cGCCGCuGcCGCCuGGCGCGAGAa -3' miRNA: 3'- gcucaCGGCGuC-GCGGcUUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 12963 | 0.66 | 0.814721 |
Target: 5'- cCGGGcgGCgCGCGcCGCCGAcgacgACGCGAGc -3' miRNA: 3'- -GCUCa-CG-GCGUcGCGGCU-----UGCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 43856 | 0.66 | 0.814721 |
Target: 5'- gGGGcUGCCGCGGgGaagagacggaaCGAGCGCGGc- -3' miRNA: 3'- gCUC-ACGGCGUCgCg----------GCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 110125 | 0.67 | 0.806037 |
Target: 5'- cCGAGaGCCGCcGCGCuuuugggggCGGGCgGCGAAAc -3' miRNA: 3'- -GCUCaCGGCGuCGCG---------GCUUG-CGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 2926 | 0.67 | 0.806037 |
Target: 5'- gGAGUcGCCG-AGCGagaCGGACGgGAAGa -3' miRNA: 3'- gCUCA-CGGCgUCGCg--GCUUGCgCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 87755 | 0.67 | 0.797199 |
Target: 5'- gCGccUGCCGCAGCGCC----GCGAAGa -3' miRNA: 3'- -GCucACGGCGUCGCGGcuugCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 67252 | 0.67 | 0.797199 |
Target: 5'- gGGGUaGCCGCuaaagcGCGCUGugguauagacGACGCGAAu -3' miRNA: 3'- gCUCA-CGGCGu-----CGCGGC----------UUGCGCUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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