Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 67252 | 0.67 | 0.797199 |
Target: 5'- gGGGUaGCCGCuaaagcGCGCUGugguauagacGACGCGAAu -3' miRNA: 3'- gCUCA-CGGCGu-----CGCGGC----------UUGCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 158850 | 0.66 | 0.831593 |
Target: 5'- aGAGaacccGCCGC--CGCCGAAUGCGGc- -3' miRNA: 3'- gCUCa----CGGCGucGCGGCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 138337 | 0.7 | 0.631735 |
Target: 5'- gCGcGUGCgCGacaaGGCGcCCGAACGCGAc- -3' miRNA: 3'- -GCuCACG-GCg---UCGC-GGCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 36342 | 0.68 | 0.712121 |
Target: 5'- gGAG-GCCGCAcGaCGuucuCCGGACGCGGAGc -3' miRNA: 3'- gCUCaCGGCGU-C-GC----GGCUUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 153881 | 0.67 | 0.779093 |
Target: 5'- -uGGUGCUGCAGCGaguuggccggcCCGAAgGcCGAGAa -3' miRNA: 3'- gcUCACGGCGUCGC-----------GGCUUgC-GCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 38589 | 0.66 | 0.838957 |
Target: 5'- cCGAG-GCCGCGgaagaagagcuucGCcucGCCGcGGCGCGAGAc -3' miRNA: 3'- -GCUCaCGGCGU-------------CG---CGGC-UUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 13440 | 0.68 | 0.72196 |
Target: 5'- cCGAGacgcgacGCgGCGGCGCCGAAggggcuccUGCGggGa -3' miRNA: 3'- -GCUCa------CGgCGUCGCGGCUU--------GCGCuuU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 135113 | 0.66 | 0.839766 |
Target: 5'- uGGGUGCCGUgccguuCGCCGAAuuaugcccCGCGAc- -3' miRNA: 3'- gCUCACGGCGuc----GCGGCUU--------GCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 129312 | 0.66 | 0.847754 |
Target: 5'- ----cGCgGCAGCGCCGAcccuAUGgGAAAg -3' miRNA: 3'- gcucaCGgCGUCGCGGCU----UGCgCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 43856 | 0.66 | 0.814721 |
Target: 5'- gGGGcUGCCGCGGgGaagagacggaaCGAGCGCGGc- -3' miRNA: 3'- gCUC-ACGGCGUCgCg----------GCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 132768 | 0.67 | 0.769842 |
Target: 5'- cCGGGcGCgGCGGCGCCGA-CGaGggGc -3' miRNA: 3'- -GCUCaCGgCGUCGCGGCUuGCgCuuU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 120406 | 1.06 | 0.003153 |
Target: 5'- gCGAGUGCCGCAGCGCCGAACGCGAAAu -3' miRNA: 3'- -GCUCACGGCGUCGCGGCUUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 55608 | 0.68 | 0.741402 |
Target: 5'- uGGGaaaGCCGCggcuGGCGCCGAAUGCc--- -3' miRNA: 3'- gCUCa--CGGCG----UCGCGGCUUGCGcuuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 35585 | 0.68 | 0.712121 |
Target: 5'- gGAGcUGCUGCGGCuucgGCCGAugGCc--- -3' miRNA: 3'- gCUC-ACGGCGUCG----CGGCUugCGcuuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 94411 | 0.69 | 0.6621 |
Target: 5'- -cAG-GCCGCGGCGCCGGuaguccagaGCGAGc -3' miRNA: 3'- gcUCaCGGCGUCGCGGCUug-------CGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 33251 | 0.7 | 0.61148 |
Target: 5'- aCGAG-GaaGCAGCGgCGAACGCGcGAu -3' miRNA: 3'- -GCUCaCggCGUCGCgGCUUGCGCuUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 110125 | 0.67 | 0.806037 |
Target: 5'- cCGAGaGCCGCcGCGCuuuugggggCGGGCgGCGAAAc -3' miRNA: 3'- -GCUCaCGGCGuCGCG---------GCUUG-CGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 95324 | 0.66 | 0.831593 |
Target: 5'- gGAGauUGCCGC--CGCCGGGCgccGCGAAAc -3' miRNA: 3'- gCUC--ACGGCGucGCGGCUUG---CGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 35787 | 0.66 | 0.823242 |
Target: 5'- aGGGcGCgGUGGCGCCGucGugGCGGGc -3' miRNA: 3'- gCUCaCGgCGUCGCGGC--UugCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 113044 | 0.67 | 0.779093 |
Target: 5'- gCGAcuggGCCGCGGCGaUCuuACGCGAGAc -3' miRNA: 3'- -GCUca--CGGCGUCGC-GGcuUGCGCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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