miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 3' -57.9 NC_005264.1 + 16641 0.71 0.561227
Target:  5'- uCGAGUG-CGUcucuGGUGCgGAGCGCGAGGg -3'
miRNA:   3'- -GCUCACgGCG----UCGCGgCUUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 40786 0.68 0.731723
Target:  5'- -----uCCGCGGCGCCGAGaGCGGAGc -3'
miRNA:   3'- gcucacGGCGUCGCGGCUUgCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 16432 0.67 0.787309
Target:  5'- uCGAcUGCCGCGGgGCCugcccgcggguguGAACGUGGu- -3'
miRNA:   3'- -GCUcACGGCGUCgCGG-------------CUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 5526 0.72 0.493036
Target:  5'- uGAcaGCCGCGGCGUCucGCGCGGAGc -3'
miRNA:   3'- gCUcaCGGCGUCGCGGcuUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 35481 0.75 0.361991
Target:  5'- aGAGUGCCGCG--GCCGAuCGCGAc- -3'
miRNA:   3'- gCUCACGGCGUcgCGGCUuGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 51950 0.7 0.631735
Target:  5'- aGGGUGCCGCuaacGCGUCGugucGGCGCGc-- -3'
miRNA:   3'- gCUCACGGCGu---CGCGGC----UUGCGCuuu -5'
24385 3' -57.9 NC_005264.1 + 15452 0.66 0.839766
Target:  5'- uGAGUGUgGacaAGCGCgacGACGCGAAAg -3'
miRNA:   3'- gCUCACGgCg--UCGCGgc-UUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 158246 0.68 0.731723
Target:  5'- ----cGCCGCGGCGCUG-GCGgGGAGg -3'
miRNA:   3'- gcucaCGGCGUCGCGGCuUGCgCUUU- -5'
24385 3' -57.9 NC_005264.1 + 118040 0.68 0.741402
Target:  5'- gGAGguuUGCCGCGGCGaCCGcGGCGuCGGc- -3'
miRNA:   3'- gCUC---ACGGCGUCGC-GGC-UUGC-GCUuu -5'
24385 3' -57.9 NC_005264.1 + 159988 0.68 0.750987
Target:  5'- ----aGCCGCAGCgggcgacgGCgCGAGCGCGAc- -3'
miRNA:   3'- gcucaCGGCGUCG--------CG-GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 122300 0.67 0.769842
Target:  5'- ----aGCCGCAGCGCCacgucccuGGGCGaCGggGa -3'
miRNA:   3'- gcucaCGGCGUCGCGG--------CUUGC-GCuuU- -5'
24385 3' -57.9 NC_005264.1 + 113044 0.67 0.779093
Target:  5'- gCGAcuggGCCGCGGCGaUCuuACGCGAGAc -3'
miRNA:   3'- -GCUca--CGGCGUCGC-GGcuUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 155369 0.68 0.712121
Target:  5'- gGAG-GCCGCAcGaCGuucuCCGGACGCGGAGc -3'
miRNA:   3'- gCUCaCGGCGU-C-GC----GGCUUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 154612 0.68 0.712121
Target:  5'- gGAGcUGCUGCGGCuucgGCCGAugGCc--- -3'
miRNA:   3'- gCUC-ACGGCGUCG----CGGCUugCGcuuu -5'
24385 3' -57.9 NC_005264.1 + 132467 0.68 0.72196
Target:  5'- cCGAGacgcgacGCgGCGGCGCCGAAggggcuccUGCGggGa -3'
miRNA:   3'- -GCUCa------CGgCGUCGCGGCUU--------GCGCuuU- -5'
24385 3' -57.9 NC_005264.1 + 97430 0.69 0.6621
Target:  5'- uGAGcGCUGCgGGCGCCGc-CGCGGAu -3'
miRNA:   3'- gCUCaCGGCG-UCGCGGCuuGCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 104167 0.69 0.641867
Target:  5'- cCGGGUGCgccUGCAGCGCCGGagaaugguAUGUGGu- -3'
miRNA:   3'- -GCUCACG---GCGUCGCGGCU--------UGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 127384 0.7 0.631735
Target:  5'- gCGAccGUCGCugaugcuuaccGGCGCCGGACGCGGc- -3'
miRNA:   3'- -GCUcaCGGCG-----------UCGCGGCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 150865 0.66 0.831593
Target:  5'- --cGUGCCGC-GCGCggcaagacaUGGGCGCGAc- -3'
miRNA:   3'- gcuCACGGCGuCGCG---------GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 157616 0.66 0.838957
Target:  5'- cCGAG-GCCGCGgaagaagagcuucGCcucGCCGcGGCGCGAGAc -3'
miRNA:   3'- -GCUCaCGGCGU-------------CG---CGGC-UUGCGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.