miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 3' -57.9 NC_005264.1 + 5526 0.72 0.493036
Target:  5'- uGAcaGCCGCGGCGUCucGCGCGGAGc -3'
miRNA:   3'- gCUcaCGGCGUCGCGGcuUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 33254 0.72 0.474237
Target:  5'- ----cGCCGCAGCGCCugcaGAGCGCGcAAGa -3'
miRNA:   3'- gcucaCGGCGUCGCGG----CUUGCGC-UUU- -5'
24385 3' -57.9 NC_005264.1 + 132467 0.68 0.72196
Target:  5'- cCGAGacgcgacGCgGCGGCGCCGAAggggcuccUGCGggGa -3'
miRNA:   3'- -GCUCa------CGgCGUCGCGGCUU--------GCGCuuU- -5'
24385 3' -57.9 NC_005264.1 + 40786 0.68 0.731723
Target:  5'- -----uCCGCGGCGCCGAGaGCGGAGc -3'
miRNA:   3'- gcucacGGCGUCGCGGCUUgCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 94408 0.66 0.831593
Target:  5'- ----aGaCCGCGGCGCgGAcuGCGCGAu- -3'
miRNA:   3'- gcucaC-GGCGUCGCGgCU--UGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 117424 0.66 0.831593
Target:  5'- gGGGcUGUCGCGGCGCgcaGGGCGCc--- -3'
miRNA:   3'- gCUC-ACGGCGUCGCGg--CUUGCGcuuu -5'
24385 3' -57.9 NC_005264.1 + 24196 0.66 0.831593
Target:  5'- aGucUGgCGCGGUGCCGGugGcCGAAGc -3'
miRNA:   3'- gCucACgGCGUCGCGGCUugC-GCUUU- -5'
24385 3' -57.9 NC_005264.1 + 154813 0.66 0.823242
Target:  5'- aGGGcGCgGUGGCGCCGucGugGCGGGc -3'
miRNA:   3'- gCUCaCGgCGUCGCGGC--UugCGCUUu -5'
24385 3' -57.9 NC_005264.1 + 91888 0.66 0.823242
Target:  5'- gCGGGgugguugGCCGCGGCaGCgaugggCGGGCGCGGc- -3'
miRNA:   3'- -GCUCa------CGGCGUCG-CG------GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 21566 0.66 0.814721
Target:  5'- cCGAGga-CGcCGGCGCCGAGacCGUGGAAa -3'
miRNA:   3'- -GCUCacgGC-GUCGCGGCUU--GCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 59908 0.66 0.814721
Target:  5'- -cAGUGCCcuGUGGCGCaGAACGUGAc- -3'
miRNA:   3'- gcUCACGG--CGUCGCGgCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 34638 0.66 0.814721
Target:  5'- gGGGUGuUCGCGGCcaCCGGuCGCGAGGu -3'
miRNA:   3'- gCUCAC-GGCGUCGc-GGCUuGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 11093 0.66 0.814721
Target:  5'- aCGA-UGCUGCGGCGUCGAGaGaCGAAu -3'
miRNA:   3'- -GCUcACGGCGUCGCGGCUUgC-GCUUu -5'
24385 3' -57.9 NC_005264.1 + 121952 0.67 0.806037
Target:  5'- gGAGUcGCCG-AGCGagaCGGACGgGAAGa -3'
miRNA:   3'- gCUCA-CGGCgUCGCg--GCUUGCgCUUU- -5'
24385 3' -57.9 NC_005264.1 + 135566 0.67 0.797199
Target:  5'- uCGAGaaGCCGC-GCGUCGcuCGCGAc- -3'
miRNA:   3'- -GCUCa-CGGCGuCGCGGCuuGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 113044 0.67 0.779093
Target:  5'- gCGAcuggGCCGCGGCGaUCuuACGCGAGAc -3'
miRNA:   3'- -GCUca--CGGCGUCGC-GGcuUGCGCUUU- -5'
24385 3' -57.9 NC_005264.1 + 122300 0.67 0.769842
Target:  5'- ----aGCCGCAGCGCCacgucccuGGGCGaCGggGa -3'
miRNA:   3'- gcucaCGGCGUCGCGG--------CUUGC-GCuuU- -5'
24385 3' -57.9 NC_005264.1 + 159988 0.68 0.750987
Target:  5'- ----aGCCGCAGCgggcgacgGCgCGAGCGCGAc- -3'
miRNA:   3'- gcucaCGGCGUCG--------CG-GCUUGCGCUuu -5'
24385 3' -57.9 NC_005264.1 + 118040 0.68 0.741402
Target:  5'- gGAGguuUGCCGCGGCGaCCGcGGCGuCGGc- -3'
miRNA:   3'- gCUC---ACGGCGUCGC-GGC-UUGC-GCUuu -5'
24385 3' -57.9 NC_005264.1 + 158246 0.68 0.731723
Target:  5'- ----cGCCGCGGCGCUG-GCGgGGAGg -3'
miRNA:   3'- gcucaCGGCGUCGCGGCuUGCgCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.