Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24385 | 3' | -57.9 | NC_005264.1 | + | 11093 | 0.66 | 0.814721 |
Target: 5'- aCGA-UGCUGCGGCGUCGAGaGaCGAAu -3' miRNA: 3'- -GCUcACGGCGUCGCGGCUUgC-GCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 34638 | 0.66 | 0.814721 |
Target: 5'- gGGGUGuUCGCGGCcaCCGGuCGCGAGGu -3' miRNA: 3'- gCUCAC-GGCGUCGc-GGCUuGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 121115 | 0.66 | 0.814721 |
Target: 5'- ----cGCCGCuGcCGCCuGGCGCGAGAa -3' miRNA: 3'- gcucaCGGCGuC-GCGGcUUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 12963 | 0.66 | 0.814721 |
Target: 5'- cCGGGcgGCgCGCGcCGCCGAcgacgACGCGAGc -3' miRNA: 3'- -GCUCa-CG-GCGUcGCGGCU-----UGCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 43856 | 0.66 | 0.814721 |
Target: 5'- gGGGcUGCCGCGGgGaagagacggaaCGAGCGCGGc- -3' miRNA: 3'- gCUC-ACGGCGUCgCg----------GCUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 110125 | 0.67 | 0.806037 |
Target: 5'- cCGAGaGCCGCcGCGCuuuugggggCGGGCgGCGAAAc -3' miRNA: 3'- -GCUCaCGGCGuCGCG---------GCUUG-CGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 2926 | 0.67 | 0.806037 |
Target: 5'- gGAGUcGCCG-AGCGagaCGGACGgGAAGa -3' miRNA: 3'- gCUCA-CGGCgUCGCg--GCUUGCgCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 121952 | 0.67 | 0.806037 |
Target: 5'- gGAGUcGCCG-AGCGagaCGGACGgGAAGa -3' miRNA: 3'- gCUCA-CGGCgUCGCg--GCUUGCgCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 135566 | 0.67 | 0.797199 |
Target: 5'- uCGAGaaGCCGC-GCGUCGcuCGCGAc- -3' miRNA: 3'- -GCUCa-CGGCGuCGCGGCuuGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 87755 | 0.67 | 0.797199 |
Target: 5'- gCGccUGCCGCAGCGCC----GCGAAGa -3' miRNA: 3'- -GCucACGGCGUCGCGGcuugCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 67252 | 0.67 | 0.797199 |
Target: 5'- gGGGUaGCCGCuaaagcGCGCUGugguauagacGACGCGAAu -3' miRNA: 3'- gCUCA-CGGCGu-----CGCGGC----------UUGCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 129552 | 0.67 | 0.788215 |
Target: 5'- gCGGGU-CCuguGCGGCGCCGcccucaggGGCGCGGAu -3' miRNA: 3'- -GCUCAcGG---CGUCGCGGC--------UUGCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 10525 | 0.67 | 0.788215 |
Target: 5'- gCGGGU-CCuguGCGGCGCCGcccucaggGGCGCGGAu -3' miRNA: 3'- -GCUCAcGG---CGUCGCGGC--------UUGCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 16432 | 0.67 | 0.787309 |
Target: 5'- uCGAcUGCCGCGGgGCCugcccgcggguguGAACGUGGu- -3' miRNA: 3'- -GCUcACGGCGUCgCGG-------------CUUGCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 57367 | 0.67 | 0.782758 |
Target: 5'- uGGGUGCCGUguuaaccuucgguggGGCgcaGCCGAuuCGCGAu- -3' miRNA: 3'- gCUCACGGCG---------------UCG---CGGCUu-GCGCUuu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 113044 | 0.67 | 0.779093 |
Target: 5'- gCGAcuggGCCGCGGCGaUCuuACGCGAGAc -3' miRNA: 3'- -GCUca--CGGCGUCGC-GGcuUGCGCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 153881 | 0.67 | 0.779093 |
Target: 5'- -uGGUGCUGCAGCGaguuggccggcCCGAAgGcCGAGAa -3' miRNA: 3'- gcUCACGGCGUCGC-----------GGCUUgC-GCUUU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 122300 | 0.67 | 0.769842 |
Target: 5'- ----aGCCGCAGCGCCacgucccuGGGCGaCGggGa -3' miRNA: 3'- gcucaCGGCGUCGCGG--------CUUGC-GCuuU- -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 76074 | 0.67 | 0.769842 |
Target: 5'- gCGAc-GCCGCgAGCGUCGAcggcucuacggGCGCGAAc -3' miRNA: 3'- -GCUcaCGGCG-UCGCGGCU-----------UGCGCUUu -5' |
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24385 | 3' | -57.9 | NC_005264.1 | + | 132768 | 0.67 | 0.769842 |
Target: 5'- cCGGGcGCgGCGGCGCCGA-CGaGggGc -3' miRNA: 3'- -GCUCaCGgCGUCGCGGCUuGCgCuuU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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