Results 41 - 60 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24385 | 5' | -53.9 | NC_005264.1 | + | 64311 | 0.67 | 0.9286 |
Target: 5'- ----aGCGCGUUgCCGCUGCCAagacugaggcccccCGUCg -3' miRNA: 3'- cgaagCGCGUAAaGGUGGCGGU--------------GCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 83225 | 0.67 | 0.944741 |
Target: 5'- gGCcgUUGCGCGUgggcgUCUagGCCGCCGCu-- -3' miRNA: 3'- -CGa-AGCGCGUAa----AGG--UGGCGGUGcag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 113961 | 0.67 | 0.935273 |
Target: 5'- aUUUCGUGU---UCCAcCCGgCGCGUCa -3' miRNA: 3'- cGAAGCGCGuaaAGGU-GGCgGUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 149498 | 0.67 | 0.930176 |
Target: 5'- cGCUcgauUCGCGCcgUUCCcuucgGCUuaGCCagGCGUCg -3' miRNA: 3'- -CGA----AGCGCGuaAAGG-----UGG--CGG--UGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 139990 | 0.67 | 0.949115 |
Target: 5'- aGgUUCGCGCGg--CC-UCGCC-CGUCc -3' miRNA: 3'- -CgAAGCGCGUaaaGGuGGCGGuGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 13416 | 0.67 | 0.944741 |
Target: 5'- cGCaccggCGCGCGa--CCGCCGCCGCc-- -3' miRNA: 3'- -CGaa---GCGCGUaaaGGUGGCGGUGcag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 101604 | 0.67 | 0.944741 |
Target: 5'- aGCUggaGCGCg---CCAUCGCCAaCGUg -3' miRNA: 3'- -CGAag-CGCGuaaaGGUGGCGGU-GCAg -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 38052 | 0.67 | 0.943382 |
Target: 5'- --gUCGCGUGggucucccagcuuuUUUCUugCGCgGCGUCa -3' miRNA: 3'- cgaAGCGCGU--------------AAAGGugGCGgUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 153941 | 0.67 | 0.935273 |
Target: 5'- ---aCGCGCGUcUCCAgCGaCACGUUg -3' miRNA: 3'- cgaaGCGCGUAaAGGUgGCgGUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 32560 | 0.67 | 0.944741 |
Target: 5'- gGCUgcCGCgGUAg--CCGCCGCaACGUCg -3' miRNA: 3'- -CGAa-GCG-CGUaaaGGUGGCGgUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 156809 | 0.68 | 0.924836 |
Target: 5'- cCUUCGCGCcguugGUUuuccccggagccUCC-CCGCC-CGUCg -3' miRNA: 3'- cGAAGCGCG-----UAA------------AGGuGGCGGuGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 57777 | 0.68 | 0.924836 |
Target: 5'- gGCUUCGCGUcgUcuagcUCC-UCGCgauuCACGUCa -3' miRNA: 3'- -CGAAGCGCGuaA-----AGGuGGCG----GUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 37783 | 0.68 | 0.924836 |
Target: 5'- cCUUCGCGCcguugGUUuuccccggagccUCC-CCGCC-CGUCg -3' miRNA: 3'- cGAAGCGCG-----UAA------------AGGuGGCGGuGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 82893 | 0.68 | 0.919252 |
Target: 5'- uGCUUCGCccuaacuccCAUUugagaguggagUCCGCCGCagACGUCg -3' miRNA: 3'- -CGAAGCGc--------GUAA-----------AGGUGGCGg-UGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 117432 | 0.68 | 0.919252 |
Target: 5'- cGCggCGCGCAgggcgCCGCCcuccaucguuuGCCGCGcCu -3' miRNA: 3'- -CGaaGCGCGUaaa--GGUGG-----------CGGUGCaG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 125043 | 0.68 | 0.919252 |
Target: 5'- gGCggCGCGCcucuucUCCGCCGCuCGCcUCg -3' miRNA: 3'- -CGaaGCGCGuaa---AGGUGGCG-GUGcAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 116390 | 0.68 | 0.913425 |
Target: 5'- aGCgcCGCGCAaaagCCGCagGCCgACGUCg -3' miRNA: 3'- -CGaaGCGCGUaaa-GGUGg-CGG-UGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 8417 | 0.68 | 0.907357 |
Target: 5'- cGUUUcCGCGCAUgugCCuuugUCGCCAuCGUCu -3' miRNA: 3'- -CGAA-GCGCGUAaa-GGu---GGCGGU-GCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 45896 | 0.68 | 0.901049 |
Target: 5'- aCUUCaGUGUAUUg-CGCCGCCGCGg- -3' miRNA: 3'- cGAAG-CGCGUAAagGUGGCGGUGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 157311 | 0.68 | 0.907357 |
Target: 5'- cGCUcCGCGCGaga-CGCCGCgGCuGUCa -3' miRNA: 3'- -CGAaGCGCGUaaagGUGGCGgUG-CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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