miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 79107 0.71 0.790128
Target:  5'- cGCagaGgGCAUcUCUGCCGCCGCGUa -3'
miRNA:   3'- -CGaagCgCGUAaAGGUGGCGGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 59918 0.71 0.758069
Target:  5'- cGCUcCGCGCAgcucggccaagagUUCCACCagcGUCGCGUUg -3'
miRNA:   3'- -CGAaGCGCGUa------------AAGGUGG---CGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 85061 0.71 0.780857
Target:  5'- cGCg--GUGCGUcUCUGCgGCCGCGUCg -3'
miRNA:   3'- -CGaagCGCGUAaAGGUGgCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 31787 0.71 0.761916
Target:  5'- cGCUUCGCcuaaggGCGgcggUCGCCGCCGCagGUCg -3'
miRNA:   3'- -CGAAGCG------CGUaaa-GGUGGCGGUG--CAG- -5'
24385 5' -53.9 NC_005264.1 + 128938 0.71 0.808228
Target:  5'- cGCUcCGC-CAUgucuucuaggagUUCCACCGCCGCcUCg -3'
miRNA:   3'- -CGAaGCGcGUA------------AAGGUGGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 90981 0.71 0.799255
Target:  5'- uGCcgUCGCGgAacaCCGCCGCCGCGa- -3'
miRNA:   3'- -CGa-AGCGCgUaaaGGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 69256 0.71 0.808228
Target:  5'- --cUCGCGCGccucaUCCGCUGCCAUGg- -3'
miRNA:   3'- cgaAGCGCGUaa---AGGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 10555 0.71 0.808228
Target:  5'- cGCggaUCGCGCGUUcgCCGCUGCUuccuCGUUc -3'
miRNA:   3'- -CGa--AGCGCGUAAa-GGUGGCGGu---GCAG- -5'
24385 5' -53.9 NC_005264.1 + 30525 0.71 0.761916
Target:  5'- gGCUcUCGCGCAgUUUgGCCGaCCGCGg- -3'
miRNA:   3'- -CGA-AGCGCGUaAAGgUGGC-GGUGCag -5'
24385 5' -53.9 NC_005264.1 + 150813 0.71 0.761916
Target:  5'- cGCUUCGCcuaaggGCGgcggUCGCCGCCGCagGUCg -3'
miRNA:   3'- -CGAAGCG------CGUaaa-GGUGGCGGUG--CAG- -5'
24385 5' -53.9 NC_005264.1 + 4791 0.71 0.77145
Target:  5'- -gUUCGCGCAccUCCACCgacucagaaGCCACG-Cg -3'
miRNA:   3'- cgAAGCGCGUaaAGGUGG---------CGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 137210 0.71 0.77145
Target:  5'- cGCggaGCGCGgccCCACCGCCGCcGUg -3'
miRNA:   3'- -CGaagCGCGUaaaGGUGGCGGUG-CAg -5'
24385 5' -53.9 NC_005264.1 + 3892 0.71 0.77145
Target:  5'- uCUUCGCGuCGUUuaCGCCGCaUugGUCg -3'
miRNA:   3'- cGAAGCGC-GUAAagGUGGCG-GugCAG- -5'
24385 5' -53.9 NC_005264.1 + 57907 0.71 0.780857
Target:  5'- cGCUUgGCacgGCugggggUUCCGCCGCCuuGUCu -3'
miRNA:   3'- -CGAAgCG---CGua----AAGGUGGCGGugCAG- -5'
24385 5' -53.9 NC_005264.1 + 109859 0.71 0.780857
Target:  5'- uGC-UCGCGCAccgCCugaguucgcagcACCGCCGCGUa -3'
miRNA:   3'- -CGaAGCGCGUaaaGG------------UGGCGGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 119451 0.71 0.808228
Target:  5'- gGCUUCGCGCc---CCuCUGCCcuaGCGUCu -3'
miRNA:   3'- -CGAAGCGCGuaaaGGuGGCGG---UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 129582 0.71 0.808228
Target:  5'- cGCggaUCGCGCGUUcgCCGCUGCUuccuCGUUc -3'
miRNA:   3'- -CGa--AGCGCGUAAa-GGUGGCGGu---GCAG- -5'
24385 5' -53.9 NC_005264.1 + 73154 0.71 0.790128
Target:  5'- aGCUgguaGCGCucaugcCCACCGCCAgcuCGUCu -3'
miRNA:   3'- -CGAag--CGCGuaaa--GGUGGCGGU---GCAG- -5'
24385 5' -53.9 NC_005264.1 + 40915 0.71 0.780857
Target:  5'- cGCUUCGC-CGUcgcccUCC-CCGCCGCGcCg -3'
miRNA:   3'- -CGAAGCGcGUAa----AGGuGGCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 91205 0.7 0.850486
Target:  5'- aGgUUCGCGCAcUgggcuaucUCUGCCGCCGCcUCg -3'
miRNA:   3'- -CgAAGCGCGUaA--------AGGUGGCGGUGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.