miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 80576 0.7 0.842408
Target:  5'- cCUUCGCGC---UCCgguGCCGCC-UGUCg -3'
miRNA:   3'- cGAAGCGCGuaaAGG---UGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 91205 0.7 0.850486
Target:  5'- aGgUUCGCGCAcUgggcuaucUCUGCCGCCGCcUCg -3'
miRNA:   3'- -CgAAGCGCGUaA--------AGGUGGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 33690 0.7 0.825676
Target:  5'- gGCUaaCGCGCAUcgcUCCGa-GCCGCGUCu -3'
miRNA:   3'- -CGAa-GCGCGUAa--AGGUggCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 95795 0.7 0.842408
Target:  5'- ----gGCGC--UUCCGCCGCuUACGUCg -3'
miRNA:   3'- cgaagCGCGuaAAGGUGGCG-GUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 11834 0.69 0.87127
Target:  5'- cGCUguagCGCGCAUcggacacgcggcccgUCGCCGCCAC-UCg -3'
miRNA:   3'- -CGAa---GCGCGUAaa-------------GGUGGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 58129 0.69 0.894504
Target:  5'- cGCgaccUCGCGCAg--CCGucuggugcuCCGUCACGUUa -3'
miRNA:   3'- -CGa---AGCGCGUaaaGGU---------GGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 57335 0.69 0.858362
Target:  5'- cGUcgCGCGCAUccucUUCCuCCGCCGgaucgcCGUCg -3'
miRNA:   3'- -CGaaGCGCGUA----AAGGuGGCGGU------GCAG- -5'
24385 5' -53.9 NC_005264.1 + 54368 0.69 0.887725
Target:  5'- aGCgUCGCGCGg--CCACCGgauccCCGCG-Cg -3'
miRNA:   3'- -CGaAGCGCGUaaaGGUGGC-----GGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 117678 0.69 0.873484
Target:  5'- cGCUgcCGCGCuc-UCCuGCCuCCGCGUCg -3'
miRNA:   3'- -CGAa-GCGCGuaaAGG-UGGcGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 34985 0.69 0.873484
Target:  5'- -aUUCGCGCGccgggUUCUagaccgccgGCCGCCGCGg- -3'
miRNA:   3'- cgAAGCGCGUa----AAGG---------UGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 74542 0.69 0.858362
Target:  5'- aGCUUCGU-CAggUUCACCGCCAacagaugguUGUCa -3'
miRNA:   3'- -CGAAGCGcGUaaAGGUGGCGGU---------GCAG- -5'
24385 5' -53.9 NC_005264.1 + 3427 0.69 0.887725
Target:  5'- gGCggCGCGCcccacuucucagGggUCCGCCGCC-CGUg -3'
miRNA:   3'- -CGaaGCGCG------------UaaAGGUGGCGGuGCAg -5'
24385 5' -53.9 NC_005264.1 + 68429 0.69 0.887725
Target:  5'- aGCgaUCGCGCAg-UCCG-CGCCGCGgUCu -3'
miRNA:   3'- -CGa-AGCGCGUaaAGGUgGCGGUGC-AG- -5'
24385 5' -53.9 NC_005264.1 + 6390 0.69 0.873484
Target:  5'- cGC-UCGUGCugcUCCACgGCCAUGcCg -3'
miRNA:   3'- -CGaAGCGCGuaaAGGUGgCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 109618 0.69 0.873484
Target:  5'- cGCuUUCGCGgAgauacgcgUCCACUaccucgGCCACGUCc -3'
miRNA:   3'- -CG-AAGCGCgUaa------AGGUGG------CGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 144791 0.69 0.887725
Target:  5'- gGC-UCGCGgcg--CCGCCGCUucGCGUCg -3'
miRNA:   3'- -CGaAGCGCguaaaGGUGGCGG--UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 125417 0.69 0.873484
Target:  5'- cGC-UCGUGCugcUCCACgGCCAUGcCg -3'
miRNA:   3'- -CGaAGCGCGuaaAGGUGgCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 134784 0.69 0.873484
Target:  5'- cGCUUcCGCGCGcUUUUACC-CgGCGUCg -3'
miRNA:   3'- -CGAA-GCGCGUaAAGGUGGcGgUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 7924 0.69 0.87127
Target:  5'- aGCaaCGCGCGcgUCCacgcgucguccacgGCCGCgGCGUCu -3'
miRNA:   3'- -CGaaGCGCGUaaAGG--------------UGGCGgUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 130860 0.69 0.87127
Target:  5'- cGCUguagCGCGCAUcggacacgcggcccgUCGCCGCCAC-UCg -3'
miRNA:   3'- -CGAa---GCGCGUAaa-------------GGUGGCGGUGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.