miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 7924 0.69 0.87127
Target:  5'- aGCaaCGCGCGcgUCCacgcgucguccacgGCCGCgGCGUCu -3'
miRNA:   3'- -CGaaGCGCGUaaAGG--------------UGGCGgUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 74542 0.69 0.858362
Target:  5'- aGCUUCGU-CAggUUCACCGCCAacagaugguUGUCa -3'
miRNA:   3'- -CGAAGCGcGUaaAGGUGGCGGU---------GCAG- -5'
24385 5' -53.9 NC_005264.1 + 57335 0.69 0.858362
Target:  5'- cGUcgCGCGCAUccucUUCCuCCGCCGgaucgcCGUCg -3'
miRNA:   3'- -CGaaGCGCGUA----AAGGuGGCGGU------GCAG- -5'
24385 5' -53.9 NC_005264.1 + 95822 0.68 0.901049
Target:  5'- ---cUGCGCAaggCCGCCGCUcCGUCc -3'
miRNA:   3'- cgaaGCGCGUaaaGGUGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 9709 0.68 0.901049
Target:  5'- uGUUUCGCGCcgcugagCCAuugugcCCGCCGCGg- -3'
miRNA:   3'- -CGAAGCGCGuaaa---GGU------GGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 37783 0.68 0.924836
Target:  5'- cCUUCGCGCcguugGUUuuccccggagccUCC-CCGCC-CGUCg -3'
miRNA:   3'- cGAAGCGCG-----UAA------------AGGuGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 82893 0.68 0.919252
Target:  5'- uGCUUCGCccuaacuccCAUUugagaguggagUCCGCCGCagACGUCg -3'
miRNA:   3'- -CGAAGCGc--------GUAA-----------AGGUGGCGg-UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 125043 0.68 0.919252
Target:  5'- gGCggCGCGCcucuucUCCGCCGCuCGCcUCg -3'
miRNA:   3'- -CGaaGCGCGuaa---AGGUGGCG-GUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 116390 0.68 0.913425
Target:  5'- aGCgcCGCGCAaaagCCGCagGCCgACGUCg -3'
miRNA:   3'- -CGaaGCGCGUaaa-GGUGg-CGG-UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 74677 0.68 0.901049
Target:  5'- aGCUg-GUGCGUUagcgCCACCGgCgACGUCu -3'
miRNA:   3'- -CGAagCGCGUAAa---GGUGGC-GgUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 157311 0.68 0.907357
Target:  5'- cGCUcCGCGCGaga-CGCCGCgGCuGUCa -3'
miRNA:   3'- -CGAaGCGCGUaaagGUGGCGgUG-CAG- -5'
24385 5' -53.9 NC_005264.1 + 57777 0.68 0.924836
Target:  5'- gGCUUCGCGUcgUcuagcUCC-UCGCgauuCACGUCa -3'
miRNA:   3'- -CGAAGCGCGuaA-----AGGuGGCG----GUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 8417 0.68 0.907357
Target:  5'- cGUUUcCGCGCAUgugCCuuugUCGCCAuCGUCu -3'
miRNA:   3'- -CGAA-GCGCGUAaa-GGu---GGCGGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 117432 0.68 0.919252
Target:  5'- cGCggCGCGCAgggcgCCGCCcuccaucguuuGCCGCGcCu -3'
miRNA:   3'- -CGaaGCGCGUaaa--GGUGG-----------CGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 156809 0.68 0.924836
Target:  5'- cCUUCGCGCcguugGUUuuccccggagccUCC-CCGCC-CGUCg -3'
miRNA:   3'- cGAAGCGCG-----UAA------------AGGuGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 45896 0.68 0.901049
Target:  5'- aCUUCaGUGUAUUg-CGCCGCCGCGg- -3'
miRNA:   3'- cGAAG-CGCGUAAagGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 132443 0.67 0.944741
Target:  5'- cGCaccggCGCGCGa--CCGCCGCCGCc-- -3'
miRNA:   3'- -CGaa---GCGCGUaaaGGUGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 94347 0.67 0.944741
Target:  5'- --aUCGCGCAgugcUCgACCGCUACa-- -3'
miRNA:   3'- cgaAGCGCGUaa--AGgUGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 64311 0.67 0.9286
Target:  5'- ----aGCGCGUUgCCGCUGCCAagacugaggcccccCGUCg -3'
miRNA:   3'- cgaagCGCGUAAaGGUGGCGGU--------------GCAG- -5'
24385 5' -53.9 NC_005264.1 + 146512 0.67 0.949115
Target:  5'- ---cCGCGCggUUCCAgaGCUacGCGUCg -3'
miRNA:   3'- cgaaGCGCGuaAAGGUggCGG--UGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.