miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 64515 0.67 0.944741
Target:  5'- ---cCGCGCuguucugUCCgcGCCGCCGCGg- -3'
miRNA:   3'- cgaaGCGCGuaa----AGG--UGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 94347 0.67 0.944741
Target:  5'- --aUCGCGCAgugcUCgACCGCUACa-- -3'
miRNA:   3'- cgaAGCGCGUaa--AGgUGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 132443 0.67 0.944741
Target:  5'- cGCaccggCGCGCGa--CCGCCGCCGCc-- -3'
miRNA:   3'- -CGaa---GCGCGUaaaGGUGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 136060 0.67 0.949115
Target:  5'- aGCccgCGUGCAggaucgagUCggaUACCGCCGCGUUg -3'
miRNA:   3'- -CGaa-GCGCGUaa------AG---GUGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 146512 0.67 0.949115
Target:  5'- ---cCGCGCggUUCCAgaGCUacGCGUCg -3'
miRNA:   3'- cgaaGCGCGuaAAGGUggCGG--UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 113961 0.67 0.935273
Target:  5'- aUUUCGUGU---UCCAcCCGgCGCGUCa -3'
miRNA:   3'- cGAAGCGCGuaaAGGU-GGCgGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 153941 0.67 0.935273
Target:  5'- ---aCGCGCGUcUCCAgCGaCACGUUg -3'
miRNA:   3'- cgaaGCGCGUAaAGGUgGCgGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 38052 0.67 0.943382
Target:  5'- --gUCGCGUGggucucccagcuuuUUUCUugCGCgGCGUCa -3'
miRNA:   3'- cgaAGCGCGU--------------AAAGGugGCGgUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 64311 0.67 0.9286
Target:  5'- ----aGCGCGUUgCCGCUGCCAagacugaggcccccCGUCg -3'
miRNA:   3'- cgaagCGCGUAAaGGUGGCGGU--------------GCAG- -5'
24385 5' -53.9 NC_005264.1 + 107620 0.67 0.930176
Target:  5'- cGCUUCaGCgGCGUgUUCCACCauaGCCGCa-- -3'
miRNA:   3'- -CGAAG-CG-CGUA-AAGGUGG---CGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 139990 0.67 0.949115
Target:  5'- aGgUUCGCGCGg--CC-UCGCC-CGUCc -3'
miRNA:   3'- -CgAAGCGCGUaaaGGuGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 25002 0.67 0.949115
Target:  5'- uCUUgGCGC-UUUCCACCaG-CACGUUa -3'
miRNA:   3'- cGAAgCGCGuAAAGGUGG-CgGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 83225 0.67 0.944741
Target:  5'- gGCcgUUGCGCGUgggcgUCUagGCCGCCGCu-- -3'
miRNA:   3'- -CGa-AGCGCGUAa----AGG--UGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 13416 0.67 0.944741
Target:  5'- cGCaccggCGCGCGa--CCGCCGCCGCc-- -3'
miRNA:   3'- -CGaa---GCGCGUaaaGGUGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 101604 0.67 0.944741
Target:  5'- aGCUggaGCGCg---CCAUCGCCAaCGUg -3'
miRNA:   3'- -CGAag-CGCGuaaaGGUGGCGGU-GCAg -5'
24385 5' -53.9 NC_005264.1 + 149498 0.67 0.930176
Target:  5'- cGCUcgauUCGCGCcgUUCCcuucgGCUuaGCCagGCGUCg -3'
miRNA:   3'- -CGA----AGCGCGuaAAGG-----UGG--CGG--UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 158234 0.66 0.964285
Target:  5'- ---aCGCGCcua--CGCCGCCGCGg- -3'
miRNA:   3'- cgaaGCGCGuaaagGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 3214 0.66 0.969654
Target:  5'- uCUUCGCGUAg--CCACCuaggcugagacgguGCgCAUGUCc -3'
miRNA:   3'- cGAAGCGCGUaaaGGUGG--------------CG-GUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 133688 0.66 0.970538
Target:  5'- uGC-UCGcCGCgg-UCCuuGCCGCCGCG-Ca -3'
miRNA:   3'- -CGaAGC-GCGuaaAGG--UGGCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 19528 0.66 0.967518
Target:  5'- aGC-UCGgGaCGg--CCGCCGCCAaCGUUg -3'
miRNA:   3'- -CGaAGCgC-GUaaaGGUGGCGGU-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.