Results 41 - 60 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24385 | 5' | -53.9 | NC_005264.1 | + | 41313 | 0.73 | 0.702582 |
Target: 5'- cGCUgaagUCGCGCGaggcCCGCCGaCCAuCGUCg -3' miRNA: 3'- -CGA----AGCGCGUaaa-GGUGGC-GGU-GCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 45896 | 0.68 | 0.901049 |
Target: 5'- aCUUCaGUGUAUUg-CGCCGCCGCGg- -3' miRNA: 3'- cGAAG-CGCGUAAagGUGGCGGUGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 46917 | 0.66 | 0.953252 |
Target: 5'- ---cCGCGCAUauggUCuCGCCGCU-CGUCu -3' miRNA: 3'- cgaaGCGCGUAa---AG-GUGGCGGuGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 54368 | 0.69 | 0.887725 |
Target: 5'- aGCgUCGCGCGg--CCACCGgauccCCGCG-Cg -3' miRNA: 3'- -CGaAGCGCGUaaaGGUGGC-----GGUGCaG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 54441 | 0.66 | 0.967205 |
Target: 5'- uGCUg-GCGCGggggaugcCCACCGCCGagcugguaagggcCGUCg -3' miRNA: 3'- -CGAagCGCGUaaa-----GGUGGCGGU-------------GCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 56317 | 0.7 | 0.834136 |
Target: 5'- cGCggcCGCGCug--CCGCCGUCGCG-Ca -3' miRNA: 3'- -CGaa-GCGCGuaaaGGUGGCGGUGCaG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 57335 | 0.69 | 0.858362 |
Target: 5'- cGUcgCGCGCAUccucUUCCuCCGCCGgaucgcCGUCg -3' miRNA: 3'- -CGaaGCGCGUA----AAGGuGGCGGU------GCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 57777 | 0.68 | 0.924836 |
Target: 5'- gGCUUCGCGUcgUcuagcUCC-UCGCgauuCACGUCa -3' miRNA: 3'- -CGAAGCGCGuaA-----AGGuGGCG----GUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 57907 | 0.71 | 0.780857 |
Target: 5'- cGCUUgGCacgGCugggggUUCCGCCGCCuuGUCu -3' miRNA: 3'- -CGAAgCG---CGua----AAGGUGGCGGugCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 58129 | 0.69 | 0.894504 |
Target: 5'- cGCgaccUCGCGCAg--CCGucuggugcuCCGUCACGUUa -3' miRNA: 3'- -CGa---AGCGCGUaaaGGU---------GGCGGUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 59918 | 0.71 | 0.758069 |
Target: 5'- cGCUcCGCGCAgcucggccaagagUUCCACCagcGUCGCGUUg -3' miRNA: 3'- -CGAaGCGCGUa------------AAGGUGG---CGGUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 64311 | 0.67 | 0.9286 |
Target: 5'- ----aGCGCGUUgCCGCUGCCAagacugaggcccccCGUCg -3' miRNA: 3'- cgaagCGCGUAAaGGUGGCGGU--------------GCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 64515 | 0.67 | 0.944741 |
Target: 5'- ---cCGCGCuguucugUCCgcGCCGCCGCGg- -3' miRNA: 3'- cgaaGCGCGuaa----AGG--UGGCGGUGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 66444 | 0.66 | 0.95601 |
Target: 5'- -aUUCGgGCGcUUCCgauggggagauggcACCGCCGCGg- -3' miRNA: 3'- cgAAGCgCGUaAAGG--------------UGGCGGUGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 68429 | 0.69 | 0.887725 |
Target: 5'- aGCgaUCGCGCAg-UCCG-CGCCGCGgUCu -3' miRNA: 3'- -CGa-AGCGCGUaaAGGUgGCGGUGC-AG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 69256 | 0.71 | 0.808228 |
Target: 5'- --cUCGCGCGccucaUCCGCUGCCAUGg- -3' miRNA: 3'- cgaAGCGCGUaa---AGGUGGCGGUGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 69298 | 0.73 | 0.68222 |
Target: 5'- aGCUUUGCGCAguagUUCCGCCuuUuCGUCu -3' miRNA: 3'- -CGAAGCGCGUa---AAGGUGGcgGuGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 69370 | 0.66 | 0.964285 |
Target: 5'- cGCgugUCGCGUAUaaaUCCucuCCGCgGCGa- -3' miRNA: 3'- -CGa--AGCGCGUAa--AGGu--GGCGgUGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 73154 | 0.71 | 0.790128 |
Target: 5'- aGCUgguaGCGCucaugcCCACCGCCAgcuCGUCu -3' miRNA: 3'- -CGAag--CGCGuaaa--GGUGGCGGU---GCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 74542 | 0.69 | 0.858362 |
Target: 5'- aGCUUCGU-CAggUUCACCGCCAacagaugguUGUCa -3' miRNA: 3'- -CGAAGCGcGUaaAGGUGGCGGU---------GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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