Results 81 - 100 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24385 | 5' | -53.9 | NC_005264.1 | + | 107620 | 0.67 | 0.930176 |
Target: 5'- cGCUUCaGCgGCGUgUUCCACCauaGCCGCa-- -3' miRNA: 3'- -CGAAG-CG-CGUA-AAGGUGG---CGGUGcag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 108517 | 0.66 | 0.952035 |
Target: 5'- gGCgUCGUGCGccaCCACCGUggcacacugcgucgCACGUCu -3' miRNA: 3'- -CGaAGCGCGUaaaGGUGGCG--------------GUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 109472 | 0.69 | 0.894504 |
Target: 5'- cGCgUCGCGCAUca-CGCuUGCCACGcCg -3' miRNA: 3'- -CGaAGCGCGUAaagGUG-GCGGUGCaG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 109618 | 0.69 | 0.873484 |
Target: 5'- cGCuUUCGCGgAgauacgcgUCCACUaccucgGCCACGUCc -3' miRNA: 3'- -CG-AAGCGCgUaa------AGGUGG------CGGUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 109859 | 0.71 | 0.780857 |
Target: 5'- uGC-UCGCGCAccgCCugaguucgcagcACCGCCGCGUa -3' miRNA: 3'- -CGaAGCGCGUaaaGG------------UGGCGGUGCAg -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 111046 | 0.67 | 0.944741 |
Target: 5'- gGC-UCGCGCGgacucgCCggacgaaguGCCGCCGCG-Cg -3' miRNA: 3'- -CGaAGCGCGUaaa---GG---------UGGCGGUGCaG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 113961 | 0.67 | 0.935273 |
Target: 5'- aUUUCGUGU---UCCAcCCGgCGCGUCa -3' miRNA: 3'- cGAAGCGCGuaaAGGU-GGCgGUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 114754 | 0.66 | 0.967518 |
Target: 5'- aGCgcaGCGCGUUcuugcCCugCGCCGC-UCg -3' miRNA: 3'- -CGaagCGCGUAAa----GGugGCGGUGcAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 114803 | 0.72 | 0.752265 |
Target: 5'- uGCUccaUGCGCAUUggCCACgCGCCAUGgUCg -3' miRNA: 3'- -CGAa--GCGCGUAAa-GGUG-GCGGUGC-AG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 116390 | 0.68 | 0.913425 |
Target: 5'- aGCgcCGCGCAaaagCCGCagGCCgACGUCg -3' miRNA: 3'- -CGaaGCGCGUaaa-GGUGg-CGG-UGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 117189 | 0.77 | 0.461029 |
Target: 5'- cGCUUgGCGCcuagCCGCCGCguCGUCa -3' miRNA: 3'- -CGAAgCGCGuaaaGGUGGCGguGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 117432 | 0.68 | 0.919252 |
Target: 5'- cGCggCGCGCAgggcgCCGCCcuccaucguuuGCCGCGcCu -3' miRNA: 3'- -CGaaGCGCGUaaa--GGUGG-----------CGGUGCaG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 117678 | 0.69 | 0.873484 |
Target: 5'- cGCUgcCGCGCuc-UCCuGCCuCCGCGUCg -3' miRNA: 3'- -CGAa-GCGCGuaaAGG-UGGcGGUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 119451 | 0.71 | 0.808228 |
Target: 5'- gGCUUCGCGCc---CCuCUGCCcuaGCGUCu -3' miRNA: 3'- -CGAAGCGCGuaaaGGuGGCGG---UGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 120444 | 1.13 | 0.002812 |
Target: 5'- aGCUUCGCGCAUUUCCACCGCCACGUCg -3' miRNA: 3'- -CGAAGCGCGUAAAGGUGGCGGUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 123377 | 0.76 | 0.518819 |
Target: 5'- gGCUgagCGCGCGUcgcagcaugcuUUCCACCGCCcCGg- -3' miRNA: 3'- -CGAa--GCGCGUA-----------AAGGUGGCGGuGCag -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 125043 | 0.68 | 0.919252 |
Target: 5'- gGCggCGCGCcucuucUCCGCCGCuCGCcUCg -3' miRNA: 3'- -CGaaGCGCGuaa---AGGUGGCG-GUGcAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 125417 | 0.69 | 0.873484 |
Target: 5'- cGC-UCGUGCugcUCCACgGCCAUGcCg -3' miRNA: 3'- -CGaAGCGCGuaaAGGUGgCGGUGCaG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 125742 | 0.72 | 0.722703 |
Target: 5'- aGUUggGCGCcg-UCCccggaacuGCCGCCGCGUCg -3' miRNA: 3'- -CGAagCGCGuaaAGG--------UGGCGGUGCAG- -5' |
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24385 | 5' | -53.9 | NC_005264.1 | + | 126300 | 0.66 | 0.960833 |
Target: 5'- cGCUUucgggCGCGCGgccgauggcUCCugCGCCcgccuCGUCg -3' miRNA: 3'- -CGAA-----GCGCGUaa-------AGGugGCGGu----GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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