miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 133688 0.66 0.970538
Target:  5'- uGC-UCGcCGCgg-UCCuuGCCGCCGCG-Ca -3'
miRNA:   3'- -CGaAGC-GCGuaaAGG--UGGCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 132443 0.67 0.944741
Target:  5'- cGCaccggCGCGCGa--CCGCCGCCGCc-- -3'
miRNA:   3'- -CGaa---GCGCGUaaaGGUGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 132218 0.78 0.406821
Target:  5'- cGCUgCGCGCGgaUCCgucGCCGCCGcCGUCg -3'
miRNA:   3'- -CGAaGCGCGUaaAGG---UGGCGGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 130860 0.69 0.87127
Target:  5'- cGCUguagCGCGCAUcggacacgcggcccgUCGCCGCCAC-UCg -3'
miRNA:   3'- -CGAa---GCGCGUAaa-------------GGUGGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 129582 0.71 0.808228
Target:  5'- cGCggaUCGCGCGUUcgCCGCUGCUuccuCGUUc -3'
miRNA:   3'- -CGa--AGCGCGUAAa-GGUGGCGGu---GCAG- -5'
24385 5' -53.9 NC_005264.1 + 128938 0.71 0.808228
Target:  5'- cGCUcCGC-CAUgucuucuaggagUUCCACCGCCGCcUCg -3'
miRNA:   3'- -CGAaGCGcGUA------------AAGGUGGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 126300 0.66 0.960833
Target:  5'- cGCUUucgggCGCGCGgccgauggcUCCugCGCCcgccuCGUCg -3'
miRNA:   3'- -CGAA-----GCGCGUaa-------AGGugGCGGu----GCAG- -5'
24385 5' -53.9 NC_005264.1 + 125742 0.72 0.722703
Target:  5'- aGUUggGCGCcg-UCCccggaacuGCCGCCGCGUCg -3'
miRNA:   3'- -CGAagCGCGuaaAGG--------UGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 125417 0.69 0.873484
Target:  5'- cGC-UCGUGCugcUCCACgGCCAUGcCg -3'
miRNA:   3'- -CGaAGCGCGuaaAGGUGgCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 125043 0.68 0.919252
Target:  5'- gGCggCGCGCcucuucUCCGCCGCuCGCcUCg -3'
miRNA:   3'- -CGaaGCGCGuaa---AGGUGGCG-GUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 123377 0.76 0.518819
Target:  5'- gGCUgagCGCGCGUcgcagcaugcuUUCCACCGCCcCGg- -3'
miRNA:   3'- -CGAa--GCGCGUA-----------AAGGUGGCGGuGCag -5'
24385 5' -53.9 NC_005264.1 + 120444 1.13 0.002812
Target:  5'- aGCUUCGCGCAUUUCCACCGCCACGUCg -3'
miRNA:   3'- -CGAAGCGCGUAAAGGUGGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 119451 0.71 0.808228
Target:  5'- gGCUUCGCGCc---CCuCUGCCcuaGCGUCu -3'
miRNA:   3'- -CGAAGCGCGuaaaGGuGGCGG---UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 117678 0.69 0.873484
Target:  5'- cGCUgcCGCGCuc-UCCuGCCuCCGCGUCg -3'
miRNA:   3'- -CGAa-GCGCGuaaAGG-UGGcGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 117432 0.68 0.919252
Target:  5'- cGCggCGCGCAgggcgCCGCCcuccaucguuuGCCGCGcCu -3'
miRNA:   3'- -CGaaGCGCGUaaa--GGUGG-----------CGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 117189 0.77 0.461029
Target:  5'- cGCUUgGCGCcuagCCGCCGCguCGUCa -3'
miRNA:   3'- -CGAAgCGCGuaaaGGUGGCGguGCAG- -5'
24385 5' -53.9 NC_005264.1 + 116390 0.68 0.913425
Target:  5'- aGCgcCGCGCAaaagCCGCagGCCgACGUCg -3'
miRNA:   3'- -CGaaGCGCGUaaa-GGUGg-CGG-UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 114803 0.72 0.752265
Target:  5'- uGCUccaUGCGCAUUggCCACgCGCCAUGgUCg -3'
miRNA:   3'- -CGAa--GCGCGUAAa-GGUG-GCGGUGC-AG- -5'
24385 5' -53.9 NC_005264.1 + 114754 0.66 0.967518
Target:  5'- aGCgcaGCGCGUUcuugcCCugCGCCGC-UCg -3'
miRNA:   3'- -CGaagCGCGUAAa----GGugGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 113961 0.67 0.935273
Target:  5'- aUUUCGUGU---UCCAcCCGgCGCGUCa -3'
miRNA:   3'- cGAAGCGCGuaaAGGU-GGCgGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.