miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 111046 0.67 0.944741
Target:  5'- gGC-UCGCGCGgacucgCCggacgaaguGCCGCCGCG-Cg -3'
miRNA:   3'- -CGaAGCGCGUaaa---GG---------UGGCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 109859 0.71 0.780857
Target:  5'- uGC-UCGCGCAccgCCugaguucgcagcACCGCCGCGUa -3'
miRNA:   3'- -CGaAGCGCGUaaaGG------------UGGCGGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 109618 0.69 0.873484
Target:  5'- cGCuUUCGCGgAgauacgcgUCCACUaccucgGCCACGUCc -3'
miRNA:   3'- -CG-AAGCGCgUaa------AGGUGG------CGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 109472 0.69 0.894504
Target:  5'- cGCgUCGCGCAUca-CGCuUGCCACGcCg -3'
miRNA:   3'- -CGaAGCGCGUAaagGUG-GCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 108517 0.66 0.952035
Target:  5'- gGCgUCGUGCGccaCCACCGUggcacacugcgucgCACGUCu -3'
miRNA:   3'- -CGaAGCGCGUaaaGGUGGCG--------------GUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 107620 0.67 0.930176
Target:  5'- cGCUUCaGCgGCGUgUUCCACCauaGCCGCa-- -3'
miRNA:   3'- -CGAAG-CG-CGUA-AAGGUGG---CGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 105347 0.66 0.960833
Target:  5'- cGCcgCGCGCGccagcaucUUcgCCGCCGCCGCc-- -3'
miRNA:   3'- -CGaaGCGCGU--------AAa-GGUGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 102862 0.74 0.630733
Target:  5'- cGC-UCGCGg----CCACCGCCGCGUg -3'
miRNA:   3'- -CGaAGCGCguaaaGGUGGCGGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 101604 0.67 0.944741
Target:  5'- aGCUggaGCGCg---CCAUCGCCAaCGUg -3'
miRNA:   3'- -CGAag-CGCGuaaaGGUGGCGGU-GCAg -5'
24385 5' -53.9 NC_005264.1 + 98064 0.66 0.953252
Target:  5'- cGCUgCGCGCAgaucgUUUCGCgGCCAaaUCu -3'
miRNA:   3'- -CGAaGCGCGUa----AAGGUGgCGGUgcAG- -5'
24385 5' -53.9 NC_005264.1 + 97944 0.74 0.598756
Target:  5'- aGCUUCGCGUcgaggucAUcUCCGCCGCCuuGCGg- -3'
miRNA:   3'- -CGAAGCGCG-------UAaAGGUGGCGG--UGCag -5'
24385 5' -53.9 NC_005264.1 + 95822 0.68 0.901049
Target:  5'- ---cUGCGCAaggCCGCCGCUcCGUCc -3'
miRNA:   3'- cgaaGCGCGUaaaGGUGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 95795 0.7 0.842408
Target:  5'- ----gGCGC--UUCCGCCGCuUACGUCg -3'
miRNA:   3'- cgaagCGCGuaAAGGUGGCG-GUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 95314 0.66 0.970538
Target:  5'- gGCa--GCGCAUggagauugCCGCCGCCggGCGcCg -3'
miRNA:   3'- -CGaagCGCGUAaa------GGUGGCGG--UGCaG- -5'
24385 5' -53.9 NC_005264.1 + 94347 0.67 0.944741
Target:  5'- --aUCGCGCAgugcUCgACCGCUACa-- -3'
miRNA:   3'- cgaAGCGCGUaa--AGgUGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 91205 0.7 0.850486
Target:  5'- aGgUUCGCGCAcUgggcuaucUCUGCCGCCGCcUCg -3'
miRNA:   3'- -CgAAGCGCGUaA--------AGGUGGCGGUGcAG- -5'
24385 5' -53.9 NC_005264.1 + 90981 0.71 0.799255
Target:  5'- uGCcgUCGCGgAacaCCGCCGCCGCGa- -3'
miRNA:   3'- -CGa-AGCGCgUaaaGGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 90819 0.74 0.599785
Target:  5'- cGUcUCGCGUGUggCgGCCGCgCACGUCg -3'
miRNA:   3'- -CGaAGCGCGUAaaGgUGGCG-GUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 86700 0.73 0.671971
Target:  5'- cGCcgCGCGCGgucuuugCCGCCGuCCGCGUa -3'
miRNA:   3'- -CGaaGCGCGUaaa----GGUGGC-GGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 85061 0.71 0.780857
Target:  5'- cGCg--GUGCGUcUCUGCgGCCGCGUCg -3'
miRNA:   3'- -CGaagCGCGUAaAGGUGgCGGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.