miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 83225 0.67 0.944741
Target:  5'- gGCcgUUGCGCGUgggcgUCUagGCCGCCGCu-- -3'
miRNA:   3'- -CGa-AGCGCGUAa----AGG--UGGCGGUGcag -5'
24385 5' -53.9 NC_005264.1 + 82893 0.68 0.919252
Target:  5'- uGCUUCGCccuaacuccCAUUugagaguggagUCCGCCGCagACGUCg -3'
miRNA:   3'- -CGAAGCGc--------GUAA-----------AGGUGGCGg-UGCAG- -5'
24385 5' -53.9 NC_005264.1 + 80576 0.7 0.842408
Target:  5'- cCUUCGCGC---UCCgguGCCGCC-UGUCg -3'
miRNA:   3'- cGAAGCGCGuaaAGG---UGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 79107 0.71 0.790128
Target:  5'- cGCagaGgGCAUcUCUGCCGCCGCGUa -3'
miRNA:   3'- -CGaagCgCGUAaAGGUGGCGGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 75689 0.66 0.957157
Target:  5'- cGCggCGCGCAUgcugUUCagUACCGCgACGaUCu -3'
miRNA:   3'- -CGaaGCGCGUA----AAG--GUGGCGgUGC-AG- -5'
24385 5' -53.9 NC_005264.1 + 74677 0.68 0.901049
Target:  5'- aGCUg-GUGCGUUagcgCCACCGgCgACGUCu -3'
miRNA:   3'- -CGAagCGCGUAAa---GGUGGC-GgUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 74542 0.69 0.858362
Target:  5'- aGCUUCGU-CAggUUCACCGCCAacagaugguUGUCa -3'
miRNA:   3'- -CGAAGCGcGUaaAGGUGGCGGU---------GCAG- -5'
24385 5' -53.9 NC_005264.1 + 73154 0.71 0.790128
Target:  5'- aGCUgguaGCGCucaugcCCACCGCCAgcuCGUCu -3'
miRNA:   3'- -CGAag--CGCGuaaa--GGUGGCGGU---GCAG- -5'
24385 5' -53.9 NC_005264.1 + 69370 0.66 0.964285
Target:  5'- cGCgugUCGCGUAUaaaUCCucuCCGCgGCGa- -3'
miRNA:   3'- -CGa--AGCGCGUAa--AGGu--GGCGgUGCag -5'
24385 5' -53.9 NC_005264.1 + 69298 0.73 0.68222
Target:  5'- aGCUUUGCGCAguagUUCCGCCuuUuCGUCu -3'
miRNA:   3'- -CGAAGCGCGUa---AAGGUGGcgGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 69256 0.71 0.808228
Target:  5'- --cUCGCGCGccucaUCCGCUGCCAUGg- -3'
miRNA:   3'- cgaAGCGCGUaa---AGGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 68429 0.69 0.887725
Target:  5'- aGCgaUCGCGCAg-UCCG-CGCCGCGgUCu -3'
miRNA:   3'- -CGa-AGCGCGUaaAGGUgGCGGUGC-AG- -5'
24385 5' -53.9 NC_005264.1 + 66444 0.66 0.95601
Target:  5'- -aUUCGgGCGcUUCCgauggggagauggcACCGCCGCGg- -3'
miRNA:   3'- cgAAGCgCGUaAAGG--------------UGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 64515 0.67 0.944741
Target:  5'- ---cCGCGCuguucugUCCgcGCCGCCGCGg- -3'
miRNA:   3'- cgaaGCGCGuaa----AGG--UGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 64311 0.67 0.9286
Target:  5'- ----aGCGCGUUgCCGCUGCCAagacugaggcccccCGUCg -3'
miRNA:   3'- cgaagCGCGUAAaGGUGGCGGU--------------GCAG- -5'
24385 5' -53.9 NC_005264.1 + 59918 0.71 0.758069
Target:  5'- cGCUcCGCGCAgcucggccaagagUUCCACCagcGUCGCGUUg -3'
miRNA:   3'- -CGAaGCGCGUa------------AAGGUGG---CGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 58129 0.69 0.894504
Target:  5'- cGCgaccUCGCGCAg--CCGucuggugcuCCGUCACGUUa -3'
miRNA:   3'- -CGa---AGCGCGUaaaGGU---------GGCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 57907 0.71 0.780857
Target:  5'- cGCUUgGCacgGCugggggUUCCGCCGCCuuGUCu -3'
miRNA:   3'- -CGAAgCG---CGua----AAGGUGGCGGugCAG- -5'
24385 5' -53.9 NC_005264.1 + 57777 0.68 0.924836
Target:  5'- gGCUUCGCGUcgUcuagcUCC-UCGCgauuCACGUCa -3'
miRNA:   3'- -CGAAGCGCGuaA-----AGGuGGCG----GUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 57335 0.69 0.858362
Target:  5'- cGUcgCGCGCAUccucUUCCuCCGCCGgaucgcCGUCg -3'
miRNA:   3'- -CGaaGCGCGUA----AAGGuGGCGGU------GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.