miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24385 5' -53.9 NC_005264.1 + 56317 0.7 0.834136
Target:  5'- cGCggcCGCGCug--CCGCCGUCGCG-Ca -3'
miRNA:   3'- -CGaa-GCGCGuaaaGGUGGCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 54441 0.66 0.967205
Target:  5'- uGCUg-GCGCGggggaugcCCACCGCCGagcugguaagggcCGUCg -3'
miRNA:   3'- -CGAagCGCGUaaa-----GGUGGCGGU-------------GCAG- -5'
24385 5' -53.9 NC_005264.1 + 54368 0.69 0.887725
Target:  5'- aGCgUCGCGCGg--CCACCGgauccCCGCG-Cg -3'
miRNA:   3'- -CGaAGCGCGUaaaGGUGGC-----GGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 46917 0.66 0.953252
Target:  5'- ---cCGCGCAUauggUCuCGCCGCU-CGUCu -3'
miRNA:   3'- cgaaGCGCGUAa---AG-GUGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 45896 0.68 0.901049
Target:  5'- aCUUCaGUGUAUUg-CGCCGCCGCGg- -3'
miRNA:   3'- cGAAG-CGCGUAAagGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 41313 0.73 0.702582
Target:  5'- cGCUgaagUCGCGCGaggcCCGCCGaCCAuCGUCg -3'
miRNA:   3'- -CGA----AGCGCGUaaa-GGUGGC-GGU-GCAG- -5'
24385 5' -53.9 NC_005264.1 + 40915 0.71 0.780857
Target:  5'- cGCUUCGC-CGUcgcccUCC-CCGCCGCGcCg -3'
miRNA:   3'- -CGAAGCGcGUAa----AGGuGGCGGUGCaG- -5'
24385 5' -53.9 NC_005264.1 + 39207 0.66 0.964285
Target:  5'- ---aCGCGCcua--CGCCGCCGCGg- -3'
miRNA:   3'- cgaaGCGCGuaaagGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 39178 0.66 0.967518
Target:  5'- gGCUgggCGCGCGacUCUACCGCgCAUcgcuucagaGUCu -3'
miRNA:   3'- -CGAa--GCGCGUaaAGGUGGCG-GUG---------CAG- -5'
24385 5' -53.9 NC_005264.1 + 39060 0.66 0.970538
Target:  5'- -gUUCGCGCGgcggUCCACCcCCggACGcCg -3'
miRNA:   3'- cgAAGCGCGUaa--AGGUGGcGG--UGCaG- -5'
24385 5' -53.9 NC_005264.1 + 38868 0.66 0.964285
Target:  5'- aGCUccUCGCGgGUguaCACCGCCAaaggcacgaaGUCc -3'
miRNA:   3'- -CGA--AGCGCgUAaagGUGGCGGUg---------CAG- -5'
24385 5' -53.9 NC_005264.1 + 38159 0.66 0.970538
Target:  5'- aGCaugCGUGCGa--CUACCGCCGCGc- -3'
miRNA:   3'- -CGaa-GCGCGUaaaGGUGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 38052 0.67 0.943382
Target:  5'- --gUCGCGUGggucucccagcuuuUUUCUugCGCgGCGUCa -3'
miRNA:   3'- cgaAGCGCGU--------------AAAGGugGCGgUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 37783 0.68 0.924836
Target:  5'- cCUUCGCGCcguugGUUuuccccggagccUCC-CCGCC-CGUCg -3'
miRNA:   3'- cGAAGCGCG-----UAA------------AGGuGGCGGuGCAG- -5'
24385 5' -53.9 NC_005264.1 + 34985 0.69 0.873484
Target:  5'- -aUUCGCGCGccgggUUCUagaccgccgGCCGCCGCGg- -3'
miRNA:   3'- cgAAGCGCGUa----AAGG---------UGGCGGUGCag -5'
24385 5' -53.9 NC_005264.1 + 33690 0.7 0.825676
Target:  5'- gGCUaaCGCGCAUcgcUCCGa-GCCGCGUCu -3'
miRNA:   3'- -CGAa-GCGCGUAa--AGGUggCGGUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 32985 0.66 0.964285
Target:  5'- gGC-UCGCGCAUaucgCCAUCggGCgCugGUCg -3'
miRNA:   3'- -CGaAGCGCGUAaa--GGUGG--CG-GugCAG- -5'
24385 5' -53.9 NC_005264.1 + 32919 0.66 0.957157
Target:  5'- --aUCGCGCAggggUCGCggggCGCCGCGUg -3'
miRNA:   3'- cgaAGCGCGUaaa-GGUG----GCGGUGCAg -5'
24385 5' -53.9 NC_005264.1 + 32560 0.67 0.944741
Target:  5'- gGCUgcCGCgGUAg--CCGCCGCaACGUCg -3'
miRNA:   3'- -CGAa-GCG-CGUaaaGGUGGCGgUGCAG- -5'
24385 5' -53.9 NC_005264.1 + 32313 0.81 0.290179
Target:  5'- cGCUUCGCGCAggUCUAucUCGCCgGCGUCu -3'
miRNA:   3'- -CGAAGCGCGUaaAGGU--GGCGG-UGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.